Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30358
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036694-5|AAB88341.1|  186|Caenorhabditis elegans Hypothetical ...    66   1e-11
AC024817-9|ABQ13055.1|   97|Caenorhabditis elegans Hypothetical ...    29   2.0  
U80841-1|AAB37939.1|  477|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF036694-5|AAB88341.1|  186|Caenorhabditis elegans Hypothetical
           protein CD4.3 protein.
          Length = 186

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 36/98 (36%), Positives = 58/98 (59%)
 Frame = +2

Query: 218 RFKSDLYEPDYLISLQPDEPVYDCLNLQLKGYDYAILEACQSQIHRYAEVMGLQVEDCWA 397
           R  S LYEP +  S +   P Y+ +N++++G+D+  LE  Q+ IH+ A+  G  V D +A
Sbjct: 29  RDASLLYEPKFQDSRE--FPEYNTINVRIQGHDFGSLEKYQAYIHKTAKRFGFTVVDSYA 86

Query: 398 TPAQQLKVQRFKPGSTALDAEYQLNIYERNVQVVDVPA 511
             AQ  K   +KP ST  ++E  ++ Y+R V++ DV A
Sbjct: 87  VAAQTQKAITYKPYSTVSESEIDMSTYDRVVRLSDVAA 124


>AC024817-9|ABQ13055.1|   97|Caenorhabditis elegans Hypothetical
           protein Y54G2A.52 protein.
          Length = 97

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 152 NFLSNFLNYFEACLNTCSLK 93
           N  SNF+ YFE C N C L+
Sbjct: 46  NCPSNFIYYFECCANECCLR 65


>U80841-1|AAB37939.1|  477|Caenorhabditis elegans Hypothetical
           protein C13A10.1 protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 107 YSNMLRNNLKNLIKSCRSVQLKIIDSVGTNHIITN 211
           +S     N KNL ++C + Q+  +DS   N+ +TN
Sbjct: 205 FSKFSLKNSKNLTENCATCQILQLDSNLVNYDVTN 239


>U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical
           protein F29B9.8 protein.
          Length = 381

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 171 LSCTLRQLFIKFFKLF 124
           LSCT+R+ F KFF LF
Sbjct: 80  LSCTIRKDFFKFFVLF 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,019,788
Number of Sequences: 27780
Number of extensions: 188774
Number of successful extensions: 480
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)