Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30358
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39680.1 68418.m04805 pentatricopeptide (PPR) repeat-containi...    30   1.1  
At2g05890.1 68415.m00638 hypothetical protein includes At2g05890...    29   1.4  
At4g38440.1 68417.m05432 expressed protein                             28   3.2  
At3g43100.1 68416.m04530 hypothetical protein includes At2g05890...    28   3.2  
At3g58960.1 68416.m06570 F-box family protein contains F-box dom...    27   7.5  
At5g26760.2 68418.m03189 expressed protein                             27   9.9  
At4g15960.1 68417.m02423 epoxide hydrolase, putative similar to ...    27   9.9  

>At5g39680.1 68418.m04805 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 710

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 125 NNLKNLIKSC-RSVQLKIIDSVGTNHIITNQRRFKSDLYEPDYLISL 262
           + L  L+K C  S  L+I +S+  + I+TNQ     D Y+ + LI+L
Sbjct: 32  DRLNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINL 78


>At2g05890.1 68415.m00638 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 456

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
 Frame = +2

Query: 65  TIRKIKIDAL*ENMYSNMLRNNLKNLIKSCRSVQLKIIDSVGTNHIITNQRRFKSDLYEP 244
           +I+ I +D   + MY+ + R  +K   +       KII ++  N   ++Q R     Y+ 
Sbjct: 14  SIKMILVDKAGDKMYAAVRREQIKKFERCVTEGVWKIITTITLNP-TSDQYRISDLKYKI 72

Query: 245 DYLI--SLQPDEPVYDCLNLQLKGYDYAILEACQSQIHRYAEVMGLQVE 385
            ++   ++ P + V D L L L  +D  +  +  S I    +VMG  ++
Sbjct: 73  GFVFKTTVSPCDTVSDSLFLSLAKFDVILSGSTNSNI--LHDVMGQVID 119


>At4g38440.1 68417.m05432 expressed protein
          Length = 1465

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 128  NLKNLIKSCRSVQLKIIDSVGTNHIITNQRRFKSDLYE 241
            N +NL    + +  + +D    NH  T   RFKSD++E
Sbjct: 1225 NTRNLYNYLQELYGQFLDEARLNHRDTELLRFKSDIHE 1262


>At3g43100.1 68416.m04530 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 269

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
 Frame = +2

Query: 65  TIRKIKIDAL*ENMYSNMLRNNLKNLIKSCRSVQLKIIDSVGTNHIITNQRRFKSDL-YE 241
           +I  I +D   + MY+ + R  +K   +       KII ++  N   T+ +   SDL Y+
Sbjct: 42  SIEMILVDEAGDKMYAAVRREQIKKFERCLTEGVWKIITTITLNP--TSGKYRISDLKYK 99

Query: 242 PDYLI--SLQPDEPVYDCLNLQLKGYDYAILEACQSQIHRYAEVMGLQVE 385
             ++   ++ P + V D L L L  +D  +  +  S I    +VMG  V+
Sbjct: 100 IGFVFKTTVSPCDSVSDALFLSLAKFDVILSGSANSNI--LHDVMGQVVD 147


>At3g58960.1 68416.m06570 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 475

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 269 DEPVYDCLNLQLKGYDYAILEACQSQIHRYAEVMGLQVE 385
           DEP+ +CL+      DY+ LE+C  +    +E  G ++E
Sbjct: 385 DEPICECLS------DYSFLESCLVKTVEISEYSGTKIE 417


>At5g26760.2 68418.m03189 expressed protein
          Length = 735

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 134 KNLIKSCRSVQLKIIDSVGTNHIITNQRRFKSDLYEPDYLISLQPDEPVYDCLNLQLKG 310
           + ++  C  ++ K   + G + +        SD Y  +Y +S QP   + D L+ +LKG
Sbjct: 285 RKILSFCNEIE-KDFKNFGFDEMGLASSAMMSDGYGVEYSVSKQPQCSMEDSLSCKLKG 342


>At4g15960.1 68417.m02423 epoxide hydrolase, putative similar to
           epoxide hydrolase [Solanum tuberosum] GI:407944;
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family
          Length = 375

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/21 (42%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = -2

Query: 398 SPNSPLLV-IPSLQHIYGSDF 339
           SP +P+ V +P+L+H++G D+
Sbjct: 186 SPRNPVRVPVPTLRHVFGDDY 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,121,084
Number of Sequences: 28952
Number of extensions: 163082
Number of successful extensions: 387
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)