Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30357
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14) 28 5.3
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25) 27 6.9
SB_14638| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19) 27 9.2
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 30.3 bits (65), Expect = 0.98
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = -1
Query: 351 SPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDG--QCWAASVSDSVQLTEDHGWADPD 178
SP Q+ ++G+ S + E++ G DGRD + W DS + +E W P
Sbjct: 581 SPPRQAEAIGS-SRDVGKETVRDGGRDSGRDGRDTGRESWRDGARDSGRDSERKRWPRPP 639
Query: 177 PHHVMRHIRVRHESSYRPRCRTVNQFSRHA 88
RH SS P +TV + S +A
Sbjct: 640 SPEPARHSHPDVTSSQSPALKTVKRPSDNA 669
>SB_20777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 351 SPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTED 199
S D +GAN T + S C G Q I+G D A V+DS + +D
Sbjct: 194 SEEDNGSLLGAN-TEICHSSCHCQGCQSQIEGDDTPVAAREVADSCETIQD 243
>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 205 RELDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRARS 357
+ ++R RRP+L V F + + EDE +RA L HR RS
Sbjct: 90 KRMERKKKGRRPSLFRRFVGAFRNNPSNSEAEDEESELRAPPDYLSHRRRS 140
>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 253 SAVDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEP 423
+ +D FL++ A + ADTAA + A V +K + L T+ S ++ P
Sbjct: 661 TVLDSFLKASAAGGLGSVKAEVLADTAAALASANVQVVSSKVIGRLHTLISKTFISP 717
>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
Length = 1089
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 245 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 328
W L +PK PR+ ++ V+FAPT
Sbjct: 465 WDQLEENDVASPKSPRVDQVVRVQFAPT 492
>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Frame = -1
Query: 354 ASPVDQSRSVGANSTGLIFESLGCFGAQEVIDGRDGQCWAASVSDSVQLTEDHGWADP-- 181
A P + + G T ++ + G + + + G+C S ++ L+ W D
Sbjct: 407 AKPAVTAANTGNMDTPVVNDR-GMYSCPKRMQTGPGECNPPSPKEANDLSRVKQWVDQLC 465
Query: 180 DPHHVMRHIRVRHESSYRPRCR 115
H + R +H SYR CR
Sbjct: 466 AAHELETVTRSKHRKSYRHACR 487
>SB_8274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 245 WPSLPSMTSCAPKQPRLSKMRPVEFAPT 328
W L +PK PR+ ++ V+FAPT
Sbjct: 164 WDQLEENDVASPKSPRVDQVVRVQFAPT 191
>SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)
Length = 526
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 261 DGRDGQCWAASVSDSVQLTEDHGWADPD 178
D + GQCWA + + GWADP+
Sbjct: 434 DNKPGQCWAFQGQQGYVVIK--GWADPE 459
>SB_14638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 258
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 22 RALTMVYESDFYTTRRPYRSTYSVTAEL--IYRPTSRSVTRLVTY 150
+ L M+Y+ DF TR+ + T S + EL + P S R++ Y
Sbjct: 38 KRLPMLYDEDFMATRKNQQQTQSESLELEELAMPVSPYNVRVLYY 82
>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
Length = 975
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +2
Query: 191 HPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPVEFAPTLRL*STGLALWCRA 370
H SS + T A QH+ + S PR + + E A T+ L S+G L+CRA
Sbjct: 10 HELSSKKYFRFFTVALQHYGHISS--------PRFAVVTSEEVAKTIGLHSSGNVLFCRA 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,961,695
Number of Sequences: 59808
Number of extensions: 327184
Number of successful extensions: 889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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