Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30357
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23330.1 68414.m02917 expressed protein                             30   1.1  
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ...    28   4.3  
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    27   5.7  
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    27   5.7  
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    27   7.5  
At1g06350.1 68414.m00671 fatty acid desaturase family protein si...    27   7.5  
At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) iden...    27   9.9  
At2g11090.1 68415.m01187 expressed protein                             27   9.9  
At1g06360.1 68414.m00672 fatty acid desaturase family protein si...    27   9.9  

>At1g23330.1 68414.m02917 expressed protein
          Length = 471

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 160 AHQGTSRVELP-TEMSDGKSVQPSRCRWTCRADASCRSHSRIPWLMLVLSFGF 5
           A  GT+R  +   +  DGKS++P      C+          IPWL    +FGF
Sbjct: 206 ALNGTTRTYIDGIQPEDGKSLKPISLLQICKLGVIMYDWIDIPWLKSYYNFGF 258


>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
           protein / snRNP family protein contains similarity to
           U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
           sapiens] gi|2708307|gb|AAC51926
          Length = 786

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 176 GSGSAHPWSSVSWTESLTDAAQHWPSLPSMTSCAPKQPRLSKMRPV 313
           GSG+ +P S V      T  A  + S+PS  S AP Q  L+K+  +
Sbjct: 147 GSGATNPTSGV------TMGASTYSSIPSEASAAPSQTLLTKVSSI 186


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 232 RRPALAISAVDDFLRSEATKTFEDETRRIRADT 330
           RRP +    VDD  R E  +  E+E   + A+T
Sbjct: 120 RRPVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 232 RRPALAISAVDDFLRSEATKTFEDETRRIRADT 330
           RRP +    VDD  R E  +  E+E   + A+T
Sbjct: 120 RRPVVKFKPVDDHDRIEGREAAEEEDNNVEAET 152


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 40  YESDFYTTRRPYRSTYSVTAELIYR 114
           Y   FYT R+P  ST +  A+ +Y+
Sbjct: 451 YIESFYTLRKPVASTINTLADALYK 475


>At1g06350.1 68414.m00671 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 300

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 164 ITW*GSGSAHPWSSVSWTESLTDAAQHWPSLPSM 265
           +TW  + + H W S SW    T     W SL +M
Sbjct: 209 VTWLVNSACHIWGSRSWNTKDTSRNVWWLSLFTM 242


>At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1)
           identical to peroxisomal ABC transporter PXA1
           GI:15320529 from [Arabidopsis thaliana]; contains Pfam
           profile PF00005: ABC transporter;
          Length = 1337

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 52  FYTTRRPYRSTYSVTAELIYRPTSRSVTRLVT 147
           FY  +RPY +  ++  +LIY  TS   + L+T
Sbjct: 519 FYVPQRPYMAVGTLRDQLIYPLTSGQESELLT 550


>At2g11090.1 68415.m01187 expressed protein
          Length = 151

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 194 PWSSVSWTESLTDAAQHWPSLPSMTS 271
           PWSS +WT + +  +  W S+ + T+
Sbjct: 38  PWSSTTWTTTRSHYSTPWSSIITSTT 63


>At1g06360.1 68414.m00672 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 299

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 164 ITW*GSGSAHPWSSVSWTESLTDAAQHWPSLPSM 265
           +TW  + + H W S SW    T     W SL +M
Sbjct: 208 VTWLVNSACHIWGSRSWKTKDTSRNVWWLSLFTM 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,825,858
Number of Sequences: 28952
Number of extensions: 218169
Number of successful extensions: 633
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)