Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30356
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S...    26   3.8  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.8  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    25   8.9  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  

>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
           Dim1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 431 YALYSFSTIRHFELTLRCSHALLPMGTGNRSTIS 330
           Y LY  +TI  F    R  H ++ +GTGN + I+
Sbjct: 73  YELYDRTTIMFF---YRNKHMMIDLGTGNNNKIN 103


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 177 VPFYERNRFSFVNFS*LKLLRCKRTCVRYNICTIDITLNF*Y 302
           VP++   R S + F   + +     C +YNI   D T  F Y
Sbjct: 43  VPYWLSIRLSLLYFKLTEAISFTEKCEKYNISLFDSTFVFGY 84


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 160 LHLNNILNEVVSAKVT*PTIYHIHNILQ 77
           +H N+ +N   S+  T PT+ HI ++LQ
Sbjct: 145 VHPNDHVNMSQSSNDTFPTVMHIASVLQ 172


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 498 YCVCVYLHLLGIGLVLSQTTLLVRAIFFLND 406
           YC+ V L  +G+G V S +  L  A    ND
Sbjct: 653 YCLSVVLDAMGVGGVASSSENLEAARILYND 683


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,881,919
Number of Sequences: 5004
Number of extensions: 32703
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)