Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30356
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   0.81 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   3.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.5  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   10.0 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   10.0 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   10.0 

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 383 RCSHALLPMGTGNRSTISCNLVYTRA 306
           R  H+ + + TGN S ++C + + R+
Sbjct: 194 RQRHSTIHLSTGNYSRLACEIQFVRS 219


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 195 FSHKKEPFKHW 163
           F+H +E F HW
Sbjct: 297 FAHPREEFNHW 307


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 484 ISALIRYRTSFEPNNAF 434
           I A+I ++ S+E +NAF
Sbjct: 261 IGAVIEFKYSYEISNAF 277


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 454 FEPNNAFSTRYILSQRFGIS 395
           F P NA+  R  L+ RFG++
Sbjct: 160 FIPPNAYRFRPPLNPRFGLA 179


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 454 FEPNNAFSTRYILSQRFGIS 395
           F P NA+  R  L+ RFG++
Sbjct: 170 FIPPNAYRFRPPLNPRFGLA 189


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 403  GISSSRYDAVTRCYPWAPVTAQRSAATSSIRVH 305
            G     Y    +  P APV    S+ +SSI +H
Sbjct: 1391 GNDKLHYTLTVQVPPSAPVLYVTSSTSSSILLH 1423


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -3

Query: 403  GISSSRYDAVTRCYPWAPVTAQRSAATSSIRVH 305
            G     Y    +  P APV    S+ +SSI +H
Sbjct: 1387 GNDKLHYTLTVQVPPSAPVLYVTSSTSSSILLH 1419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,646
Number of Sequences: 438
Number of extensions: 2251
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)