Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30356
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69570.1 68414.m08001 Dof-type zinc finger domain-containing ...    28   3.2  
At1g67150.1 68414.m07639 hypothetical protein contains Pfam prof...    27   5.7  
At5g11640.1 68418.m01361 expressed protein predicted proteins, D...    25   6.8  
At5g08290.1 68418.m00976 yellow-leaf-specific protein 8 (YLS8) /...    27   9.9  

>At1g69570.1 68414.m08001 Dof-type zinc finger domain-containing
           protein nearly identical to H-protein promoter binding
           factor-2b (Arabidopsis thaliana) GI:3386548
          Length = 399

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 401 AESLRKNIARTKSVVWLKTSPIPNK 475
           +ESLR NI  +KS VW K    P K
Sbjct: 326 SESLRMNIEASKSAVWSKLPTKPEK 350


>At1g67150.1 68414.m07639 hypothetical protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 408

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 490 VCISALIRYRTSFEPNNAFSTRYILSQRFGISSSRYDAV 374
           + +  +I Y    +P NAF+T YI    F I+S    A+
Sbjct: 274 IILRNVIAYEQCHDPENAFTTNYINFMNFLITSDEDVAI 312


>At5g11640.1 68418.m01361 expressed protein predicted proteins,
           Drosophila melanogaster and Homo sapiens
          Length = 253

 Score = 25.0 bits (52), Expect(2) = 6.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 433 STRYILSQRFGISSSRYDAVTRCYPWAPVT 344
           +T+Y L + F  SSS+    +RC+P   +T
Sbjct: 140 TTKYWLIEFFACSSSKCVRSSRCFPELSIT 169



 Score = 20.6 bits (41), Expect(2) = 6.8
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -3

Query: 502 ELLCVCISALIRYRTSFEPNNAFSTRYILSQR 407
           ++  + +S ++ YR +   +  FS  Y+L+Q+
Sbjct: 83  KIFLIAVSLIMDYRVAVWFSIIFSVIYLLAQQ 114


>At5g08290.1 68418.m00976 yellow-leaf-specific protein 8 (YLS8) /
           mitosis protein DIM1, putative contains Pfam domain
           PF02966: Mitosis protein DIM1; identical to cDNA YLS8
           mRNA for Dim1 homolog GI:13122293
          Length = 142

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 431 YALYSFSTIRHFELTLRCSHALLPMGTGNRSTIS 330
           Y LY  ST+  F    R  H ++ +GTGN + I+
Sbjct: 73  YELYDPSTVMFF---FRNKHIMIDLGTGNNNKIN 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,426,208
Number of Sequences: 28952
Number of extensions: 157119
Number of successful extensions: 314
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)