Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30354
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor...   232   4e-60
UniRef50_UPI00004D976B Cluster: UPI00004D976B related cluster; n...    32   6.8  
UniRef50_UPI0000EBCA66 Cluster: PREDICTED: hypothetical protein;...    32   8.9  
UniRef50_UPI0000D56367 Cluster: PREDICTED: similar to CG30042-PA...    32   8.9  
UniRef50_A2FYW8 Cluster: Putative uncharacterized protein; n=14;...    32   8.9  

>UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor;
           n=1; Bombyx mori|Rep: Larval cuticle protein LCP-30
           precursor - Bombyx mori (Silk moth)
          Length = 239

 Score =  232 bits (567), Expect = 4e-60
 Identities = 117/165 (70%), Positives = 117/165 (70%)
 Frame = +2

Query: 20  MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGR 199
           MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGR
Sbjct: 1   MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKPGRYVADPGRYDPSRDNSGR 60

Query: 200 YIPDNSGAYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEDLSKYLGDAYKGSSIXXXX 379
           YIPDNSGAYN                             KEDLSKYLGDAYKGSSI    
Sbjct: 61  YIPDNSGAYNGDRGDRGAAGGFYTGSGTAGGPGGAYVGTKEDLSKYLGDAYKGSSIVPLP 120

Query: 380 XXXXXXXXXXXXXXXASKVVTPTYVASKVVPPSGAGYDYKYGIIR 514
                          ASKVVTPTYVASKVVPPSGAGYDYKYGIIR
Sbjct: 121 VVKPTIPVPVTPTYVASKVVTPTYVASKVVPPSGAGYDYKYGIIR 165


>UniRef50_UPI00004D976B Cluster: UPI00004D976B related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00004D976B UniRef100 entry -
           Xenopus tropicalis
          Length = 205

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 408 SHPHTLPARWSHPHTLPARWSH 473
           SHP+ LPA +SHP+ L A +SH
Sbjct: 88  SHPNPLPAPYSHPNPLLAPYSH 109



 Score = 32.3 bits (70), Expect = 6.8
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 408 SHPHTLPARWSHPHTLPARWSH 473
           SHP+ L A +SHP+ LPA +SH
Sbjct: 128 SHPNPLLAPYSHPNPLPAPYSH 149


>UniRef50_UPI0000EBCA66 Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 255

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 197 GQSCRGWGHNGLDQLHSG-LAYRRMEKQ*SKLGCTGKECTFQFRRPAPLSETGR 39
           G +   WG   +D    G +A+RR  K+ S  GC G E    FR      E GR
Sbjct: 144 GAAAASWGRINIDSAPGGRVAWRRPPKRLSANGCHGNEAPSVFRWAEGGREAGR 197


>UniRef50_UPI0000D56367 Cluster: PREDICTED: similar to CG30042-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG30042-PA - Tribolium castaneum
          Length = 275

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +2

Query: 188 NSGRYIPDNSGAYN 229
           N GRY PDNSGAYN
Sbjct: 25  NDGRYYPDNSGAYN 38


>UniRef50_A2FYW8 Cluster: Putative uncharacterized protein; n=14;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 645

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 461 CWQRMWV*PPCWQRMWV*LAREW*ASRRAGEQCW 360
           CWQR+ V   CWQR+ V +   W  +   GE CW
Sbjct: 78  CWQRVGVEEECWQRV-VAVEESWQRAGVVGE-CW 109


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 435,734,874
Number of Sequences: 1657284
Number of extensions: 7266958
Number of successful extensions: 23110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23036
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)