Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30353
(424 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 1.6
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 3.7
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 25 3.7
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 3.7
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 3.7
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 25 4.8
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 25 4.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 4.8
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 25 4.8
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 6.4
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 6.4
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3... 25 6.4
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 292 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 176
P+FA + L LF+Q+ P + + FW S+ L+ +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 3.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 2 PRPPHSNVAVLPVQEPV 52
PR PHS + +LP + PV
Sbjct: 357 PRYPHSQMVMLPARSPV 373
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 3.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 60 SLGTGSWTGSTATLECGG 7
++GTG W GS TL GG
Sbjct: 96 AIGTGVWVGSKNTLREGG 113
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 3.7
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +3
Query: 177 PLLNKRVREIQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRPSARF 350
P+ N++ +N S + +GR N + S + R + +S ++ S PSA +
Sbjct: 158 PISNRKSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRSIDSSNPSAEY 215
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 3.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 107 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNV 12
CW I G S L+ AL+L PA+ NV
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNV 323
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 209 EFIKRQDQKRSDLDEQLKEY 268
E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 25.0 bits (52), Expect = 4.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 325 REAGQAQGFSCRRRKAPRSKEKGRRXKESARNR 423
REA + GF + KAP + +GR+ E AR R
Sbjct: 148 REAYRHFGFGPHKHKAPYVRSEGRKF-ERARGR 179
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 4.8
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = -1
Query: 100 CLLSVARVEVGHSVTRHWFLDRQH 29
C L + + +++ R W L R+H
Sbjct: 80 CCLQILGIATSYTILRSWLLSRKH 103
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.0 bits (52), Expect = 4.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 325 REAGQAQGFSCRRRKAPRSKEKGRRXKESARNR 423
REA + GF + KAP + +GR+ E AR R
Sbjct: 148 REAYRHFGFGPHKHKAPYVRSEGRKF-ERARGR 179
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 24.6 bits (51), Expect = 6.4
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +3
Query: 264 NTSTNGANSGPRRRMSSNALKRSRPSARFLV 356
N A P SSN+ K S PS FLV
Sbjct: 793 NIPLGHALGNPESNNSSNSFKPSHPSQSFLV 823
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 24.6 bits (51), Expect = 6.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 60 SLGTGSWTGSTATLECGG 7
++GTG W GS+ +L GG
Sbjct: 96 AIGTGVWVGSSKSLYRGG 113
>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 208
Score = 24.6 bits (51), Expect = 6.4
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 170 TKPAPK-QEGEGDPEFIKRQDQKRSDLDEQLKEYINE 277
T P P+ Q +G P F RQ S ++ E +NE
Sbjct: 86 TNPQPQSQSQQGGPSFGFRQSFSDSQFEQVFNEMMNE 122
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,319,550
Number of Sequences: 5004
Number of extensions: 20928
Number of successful extensions: 70
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -