Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30353
         (424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.8  
SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 28   3.7  
SB_38583| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5)                  27   8.5  
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)              27   8.5  

>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 176 PAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRA 295
           PA ++EGEG+P+  +R+ Q  +  ++Q K    + +K ++
Sbjct: 56  PANEEEGEGEPKPKRRKAQPSAPKEKQTKSRKRDKKKDKS 95


>SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 337

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 377 RGAFLLRHEKPCAWPASL*GV 315
           RGA L R+E PC W A L G+
Sbjct: 69  RGAALQRNEPPCMWIAILNGI 89


>SB_38583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 173 KPAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQR 292
           K   +   +G  +F + Q ++ S L +QLK  ++E++KQ+
Sbjct: 15  KKKKRNPDQGFADFAQAQQRQYSRLTKQLKPDMSEYKKQK 54


>SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5)
          Length = 402

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 197 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQ 289
           E + E + R+++K     E+  EY +EW KQ
Sbjct: 1   EREHEMLLREEEKERLQREKEAEYFSEWEKQ 31


>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
          Length = 982

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 170  TKPAPKQEGEGDPEFIKRQDQKRSDLDEQ 256
            T+P PKQ G  +    + +D KR+D  ++
Sbjct: 937  TEPGPKQIGPDESSLNRERDTKRADCQQK 965


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,523,628
Number of Sequences: 59808
Number of extensions: 182344
Number of successful extensions: 530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)