Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30353
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription f...    26   9.7  
U41535-12|AAK67251.1|  438|Caenorhabditis elegans Abnormal cell ...    26   9.7  
AJ130957-1|CAA10262.1|  438|Caenorhabditis elegans LIN-26B protein.    26   9.7  
AF125955-11|AAK71367.1|  178|Caenorhabditis elegans Hypothetical...    26   9.7  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    26   9.7  

>U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical
           protein M02B7.5 protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 219 SVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNAL 323
           S+K  +G        N+STNG N+   RR+S N+L
Sbjct: 594 SMKLSNGSNSSAGSSNSSTNGVNNSSFRRLSFNSL 628


>Z32673-1|CAA83585.1|  472|Caenorhabditis elegans transcription
           factor protein.
          Length = 472

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 261 RNTSTNGANSGPRRRMSSNALKRSRPS 341
           RNT +NGA S   R +  N L+ SR S
Sbjct: 295 RNTDSNGAPSKKHRWLPVNELEESRSS 321


>U41535-12|AAK67251.1|  438|Caenorhabditis elegans Abnormal cell
           lineage protein 26 protein.
          Length = 438

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 261 RNTSTNGANSGPRRRMSSNALKRSRPS 341
           RNT +NGA S   R +  N L+ SR S
Sbjct: 261 RNTDSNGAPSKKHRWLPVNELEESRSS 287


>AJ130957-1|CAA10262.1|  438|Caenorhabditis elegans LIN-26B protein.
          Length = 438

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 261 RNTSTNGANSGPRRRMSSNALKRSRPS 341
           RNT +NGA S   R +  N L+ SR S
Sbjct: 261 RNTDSNGAPSKKHRWLPVNELEESRSS 287


>AF125955-11|AAK71367.1|  178|Caenorhabditis elegans Hypothetical
           protein F46E10.11 protein.
          Length = 178

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 30  CCRSKNQCRVTE*PTSTRATLNKQPTC 110
           CCR  N    T  PT+TR+ +N  P C
Sbjct: 89  CCRVPNY-EPTLPPTTTRSPVNPNPVC 114


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
            protein W03F11.4 protein.
          Length = 1406

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 188  QEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQ 289
            ++ E DPE +  + +K  +    L+EY+ E RK+
Sbjct: 1293 KKDEKDPELLAAKKKKFKEDGNNLEEYLGEKRKE 1326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,588,643
Number of Sequences: 27780
Number of extensions: 127361
Number of successful extensions: 406
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)