Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30353
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   0.61 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   2.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   3.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   4.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   10.0 

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 398 LLPFSFERGAFLLRHEKPCAWPASL 324
           LLP+S E  A + RH++   +PA +
Sbjct: 344 LLPYSPENQAVVARHDEAMIFPADV 368


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 290 AVCAIR*CIPSTVHP 246
           A C I  C P TVHP
Sbjct: 357 AFCNIVSCSPQTVHP 371


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 398 LLPFSFERGAFLL 360
           ++P+ F+ GAFLL
Sbjct: 474 IIPYEFDPGAFLL 486


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 2   PRPPHSNVAVLPVQEP 49
           PRPPH  +   P  EP
Sbjct: 109 PRPPHPRLRREPEAEP 124



 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 2   PRPPHSNVAVLPVQEP 49
           PRPPH  +   P  EP
Sbjct: 135 PRPPHPRLRREPEAEP 150


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 103 GCLLSVARVEVGHSVTRHWF 44
           G LL +  +E+GH V   ++
Sbjct: 111 GSLLHICMLELGHEVCGRFY 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,830
Number of Sequences: 438
Number of extensions: 1524
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)