Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30353
         (424 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23930.1 68416.m03006 expressed protein                             33   0.080
At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR ...    30   0.56 
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea...    29   0.98 
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    29   1.7  
At3g43160.1 68416.m04554 expressed protein merozoite surface pro...    28   3.0  
At5g23575.1 68418.m02766 transmembrane protein, putative similar...    27   5.2  
At3g61350.1 68416.m06865 SKP1 interacting partner 4 (SKIP4) almo...    27   5.2  
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra...    26   9.1  

>At3g23930.1 68416.m03006 expressed protein
          Length = 224

 Score = 33.1 bits (72), Expect = 0.080
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 173 KPAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQR 292
           K   K +  G    IK +D++   +  QLKE   EWRK+R
Sbjct: 17  KETSKDQSRGRRHLIKERDEREKVMFLQLKEAEREWRKER 56


>At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 906

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 36  RSKNQCRVTE*PTSTRATLNKQPTCLTRRNIL 131
           + +N  RV + PT+T  T+N Q  C +RR +L
Sbjct: 504 KEENFIRVVKVPTTTSTTINAQSPCRSRRLVL 535


>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
           shock protein 83 (HSP83) nearly identical to SP|P27323
           Heat shock protein 81-1 (HSP81-1) (Heat shock protein
           83) {Arabidopsis thaliana}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00183: Hsp90 protein
          Length = 705

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 182 PKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEW 280
           PK+E EG+ E +  + +K     +++KE  +EW
Sbjct: 232 PKKENEGEVEEVDEEKEKDGKKKKKIKEVSHEW 264


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 174 NPLLNKRVREIQNSSS-VKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSR 335
           +PL   R R I  ++S  K+ SG     S   + ++ A+  PR+R  SN+ +RSR
Sbjct: 210 SPLRGSRSRSISKTNSGSKSYSGERKSRS--TSQSSDASISPRKRRLSNSRRRSR 262


>At3g43160.1 68416.m04554 expressed protein merozoite surface
           protein 2 (MSP-2), EMBL:PFU72951, Plasmodium falciparum
          Length = 295

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 213 SSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSR 335
           +S+ +TRSGR +++    +ST   NS  R   SS   K  R
Sbjct: 103 NSTTRTRSGRGFIDYVLESSTGTENSSTRTAESSTRTKNGR 143


>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
           cleft lip and palate transmembrane protein 1 [Homo
           sapiens] GI:4039014; contains Pfam profile PF05602:
           Cleft lip and palate transmembrane protein 1 (CLPTM1)
          Length = 593

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 179 APKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWR 283
           +PK   E +PE  K  D+K    +E   E+I+ W+
Sbjct: 182 SPKDSDESEPEVEKVGDKKSDPKEEVPVEWISLWK 216


>At3g61350.1 68416.m06865 SKP1 interacting partner 4 (SKIP4) almost
           idential to SKP1 interacting partner 4 GI:10716953 from
           [Arabidopsis thaliana], 42 aa extension at N-terminal;
           contains Pfam profiles PF01344: Kelch motif, PF00646:
           F-box domain
          Length = 358

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 125 IPPRQTCWLFIECRTGRSRSLSHSALVLGPAAQRRWNV 12
           +PP  T   +  C T   + ++   L L P A+R W++
Sbjct: 154 VPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTWDI 191


>At2g11810.1 68415.m01269 1,2-diacylglycerol
           3-beta-galactosyltransferase, putative /
           monogalactosyldiacylglycerol synthase, putative / MGDG
           synthase, putative identical to
           monogalactosyldiacylglycerol synthase type C
           [gi:9927295] from Arabidopsis thaliana, similar to MGDG
           synthase type A [gi:9884651] from Glycine max
          Length = 465

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 204 IQNSSSVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNALKRSRPSARF 350
           + N + V TRS +       +  +N  N    ++MS NALK S+P A F
Sbjct: 395 VDNGAGVFTRSPKETAKIVADWFSN--NKEELKKMSENALKLSQPEAVF 441


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,235,421
Number of Sequences: 28952
Number of extensions: 125632
Number of successful extensions: 332
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)