Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30352
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 31 0.10
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.41
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 27 1.3
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.2
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 26 2.9
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe... 26 2.9
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 5.1
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 25 5.1
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 6.7
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 25 8.9
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 25 8.9
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 31.1 bits (67), Expect = 0.10
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -2
Query: 476 RYHLEQFLRALPMEHTVQNTEGTEVPPQTQRLQTI 372
RY LEQ L+ P+EH + TE + PP+ R++T+
Sbjct: 85 RYGLEQQLKTNPLEHPILITEPFDNPPE-NRVKTL 118
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.1 bits (62), Expect = 0.41
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 398 PQTQRLQTIRENGIIDNPNGPPLYGVKWKKLVF 300
P + RLQ +R G+ PNG P Y ++K +VF
Sbjct: 556 PNSSRLQKLRAPGLC--PNGSPNYRNRYKLIVF 586
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 27.5 bits (58), Expect = 1.3
Identities = 7/20 (35%), Positives = 16/20 (80%)
Frame = +3
Query: 78 VEKCLAVVDDAEDECIVHTE 137
++ CL+V D+ + +C++HT+
Sbjct: 499 IDSCLSVCDEYDVQCLIHTD 518
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -2
Query: 323 VKWKKLVFGSINSIRKPDVTAAA----KGSSSLISYITHKYYSI 204
+ W++ VF SIN + P V+ A K +++ +SY+ Y+ +
Sbjct: 2768 IAWRQSVFKSINKVFLPLVSIAQQSTNKSNTNSVSYLYRGYHEL 2811
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = +1
Query: 1 WYLWSCVRALSKPSTSAASSFVCPEWWKNVWPWSMMRRT 117
W ++ V S T A +WW N W W RT
Sbjct: 334 WVIFEGVCNFSAEITRFADRNFYDDWW-NCWTWDQFART 371
>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 233
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 311 KLVFGSINSIRKPDVTAAAKGSSSLISYITHKY 213
K FGS+ I KP+ TA +S + + H +
Sbjct: 83 KAKFGSVYPISKPEYTAEVTDASKEVFVVVHMF 115
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 308 LVFGSINSIRKPDVTAAAKGSSSLISYITHKYYSIT*FYAGGILHLAYGRLF 153
+V G + +I + A+ SS S++ + F AGG L++AY +F
Sbjct: 366 MVTGLLGAIVATYIYTASSSSSPYGSFLLQLEDKLLPFTAGGFLYIAYLGVF 417
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -2
Query: 425 QNTEGTEVPPQTQRLQTIRENGIIDNPNGPPLYGVKWKKLVFGSINSIRKP 273
QNT +P +T +++ E GI+D Y W + IN +R P
Sbjct: 306 QNTSVFRIPEKTLDIKSPFEQGIVDTFKAN--YRRYWLQYSLNQINILRDP 354
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -2
Query: 368 ENGIIDNPNGPPLYGVKWKKLVFGSINSIR 279
+NG+ + PLY W L ++NS++
Sbjct: 67 DNGVSFTKDENPLYSPSWPSLADANVNSMK 96
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 98 HGQTFFHHSGHTKEEAALVDGFDNARTQ 15
H QTF HTK + L D D+ R++
Sbjct: 767 HSQTFIPSQTHTKLDLRLSDVTDSVRSR 794
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 24 RVIKTIHQRGLFFCMSGMVE 83
R +K IH G+F C+ G +E
Sbjct: 248 RALKIIHSLGMFACIFGPLE 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,669
Number of Sequences: 5004
Number of extensions: 49838
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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