Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30352
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241...    32   0.24 
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741...    30   1.3  
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050...    29   2.2  
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142...    28   5.1  
10_01_0256 - 2688172-2688786,2690779-2690857,2691567-2691652,269...    27   8.9  
01_01_0151 - 1346942-1347682                                           27   8.9  

>04_04_0397 -
           24921892-24922947,24923486-24923734,24923807-24924157,
           24924244-24924331,24924466-24924563,24925141-24925362,
           24925490-24925585,24926410-24926481,24927156-24927305
          Length = 793

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 492 GKNEMPVSSRTIPQSTPHGTYG-TKYRGNRSPSADPEAPNDP*EWD 358
           G+ E  V  +T  Q+ PH  YG T  R  R+ +  P A N+   WD
Sbjct: 101 GRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEEKSWD 146


>04_03_0618 -
           18071612-18072795,18073007-18073072,18074101-18074175,
           18074234-18074963
          Length = 684

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 358 IPFSRIVWSLWVCGGTSVPSVFCTVCSMGSALRNC 462
           +PF  +   LW+CGG    + +C+  S  + +R+C
Sbjct: 1   MPFHMLASLLWLCGGI---AAYCSAASAATCVRSC 32


>04_04_0161 +
           23203786-23203848,23204141-23204180,23204865-23205016,
           23205270-23205406,23206356-23206396,23206500-23207098,
           23207599-23207679,23208146-23208208,23209141-23209197
          Length = 410

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 475 GIISNNSSEHSPWNIRYKIQREPKSLRR 392
           G+ SN  +E +  ++R K+ R+PK++RR
Sbjct: 161 GLSSNGGAEQNGVDLREKLSRKPKNIRR 188


>05_01_0197 -
           1417672-1417899,1418921-1418974,1419267-1419552,
           1421768-1422291
          Length = 363

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 122 TFVLRIIDHGQTFFHHSGHTKEEA 51
           ++   +IDHGQTFF  S   +E A
Sbjct: 189 SYPTNLIDHGQTFFSSSRELRERA 212


>10_01_0256 -
           2688172-2688786,2690779-2690857,2691567-2691652,
           2693046-2693113,2695175-2695244,2696191-2696320,
           2696924-2697906
          Length = 676

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 19  VRALSKPSTSAASSFVCPEWWKNVWPWSMMRR 114
           VR  + P   A +S VCPEW + V   + +RR
Sbjct: 25  VRLPALPQALARASAVCPEWRRVVRDAAFLRR 56


>01_01_0151 - 1346942-1347682
          Length = 246

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +1

Query: 13  SCVRALSKPSTSAASSFVCPEWWKNVWPWSMMRRTNVSCTRR 138
           +C   +  P      +FVC +W+  V P  M    +   T+R
Sbjct: 72  ACKECVEAPGDFPRGAFVCRDWYSTVDPGHMCTAPDQPTTKR 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,615,778
Number of Sequences: 37544
Number of extensions: 364226
Number of successful extensions: 1021
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)