Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30352
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.11 
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   4.0  
SB_20797| Best HMM Match : SoxE (HMM E-Value=0.046)                    28   5.3  
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)                 28   5.3  
SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_786| Best HMM Match : EGF (HMM E-Value=0)                           27   9.2  
SB_21616| Best HMM Match : RVT_1 (HMM E-Value=0.00011)                 27   9.2  

>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 452  RALPMEHTVQNTEGTEVPPQTQRLQTIRENG-IIDNPNGPPLYGVKWKKLVFG 297
            +A P+     + + T  PP+  R  T R  G ++ +P    + GV+W+KLVFG
Sbjct: 2253 KAFPVTVLQNSVKVTNEPPKGLRANTKRAFGELMADPFESHVLGVRWRKLVFG 2305


>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 792

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +1

Query: 13  SCVRALSKPSTSAASSFVCPEWWKNVWPWSMMRRTNVSCTRRSL*PINSRP*ARCSIPPA 192
           +C R   KPS   A+   CP   +N  P +   RT+  CT       N +  A C+ PP+
Sbjct: 148 ACPRGTYKPSAGNATCVACP---RNSAPEA--DRTSCRCTSGYFRAANEKITADCTAPPS 202


>SB_20797| Best HMM Match : SoxE (HMM E-Value=0.046)
          Length = 641

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 472 IISNNSSEHSPWNIRYKIQREPKSLRRPRGSKRSVRMGLSTIRTALLCMESNGRS 308
           ++ N   +     ++ K ++ PK+  RP  S  S +  LST+RT      SNG S
Sbjct: 383 VVVNREYQQRMQVVKRKRKKRPKTTIRPEDSTPSTQATLSTLRT---LTTSNGSS 434


>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
          Length = 856

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 286 LLILPNTSFFHLTPYRGGPFGLSIIPFSRIVWSLWVCGGTSVPSVF 423
           +L  P   F    PY  G  G  I+   R++WS W+     + SVF
Sbjct: 62  ILFTPTFIFGESFPYPNGYLGGEIV--CRLLWSRWLLYTLGISSVF 105


>SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1157

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 244  DEPLAAAVTSGFRMLLILPNTSFFHLTPYRGGPFGLSI 357
            DEP A +    F   ++L    +F +  + GGPF +SI
Sbjct: 899  DEPAAESKEKQFISTVVLAIQRWFSIQGWAGGPFPISI 936


>SB_786| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1427

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 501  RCDGKNEMPVSSRTIPQSTPHGTYGTKYRGNRSPSADPEAPNDP 370
            RC G  E+PV++R +    P G Y  + +  + P      P  P
Sbjct: 1347 RCRGHYEIPVTTRPLTPRRPAGYYFPRPQVTQLPRTRGTRPTTP 1390


>SB_21616| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
          Length = 1380

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -2

Query: 470 HLEQFLRALPMEHTVQNTEGTEV----PPQTQRLQTIRENGIIDNPNG 339
           HL   L  L  E+T++  EG +      P T    T +E+G+ D P+G
Sbjct: 441 HLFNGLGKLSGEYTIRLKEGAKPFLFDNPSTSTAPTAKESGVRDKPDG 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,273,195
Number of Sequences: 59808
Number of extensions: 398813
Number of successful extensions: 1142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)