Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30352
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41012-7|AAM75375.1|  639|Caenorhabditis elegans Hypothetical pr...    32   0.21 
U41012-6|AAM75376.1|  642|Caenorhabditis elegans Hypothetical pr...    32   0.21 
Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z22181-13|CAA80184.3|  632|Caenorhabditis elegans Hypothetical p...    27   6.0  

>U41012-7|AAM75375.1|  639|Caenorhabditis elegans Hypothetical
           protein C06A6.2a protein.
          Length = 639

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 452 RALPMEHTVQNTEGTEVPPQTQRLQTIRENGI--IDNPNGPPLYGVK 318
           R+   +H    T   + P  ++  Q + +N I  +DN NGPPL  VK
Sbjct: 392 RSKKEDHAASTTSVLQAPNYSELKQMLEKNNILKVDNENGPPLKRVK 438


>U41012-6|AAM75376.1|  642|Caenorhabditis elegans Hypothetical
           protein C06A6.2b protein.
          Length = 642

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 452 RALPMEHTVQNTEGTEVPPQTQRLQTIRENGI--IDNPNGPPLYGVK 318
           R+   +H    T   + P  ++  Q + +N I  +DN NGPPL  VK
Sbjct: 392 RSKKEDHAASTTSVLQAPNYSELKQMLEKNNILKVDNENGPPLKRVK 438


>Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical
           protein M01A8.2b protein.
          Length = 869

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 425 QNTEGTEVPPQTQRLQTIRENGIIDNP-NGPPLYGVKWKKLVFGSINSIRKPDVTAAAK 252
           +N+  T V P+T +++ IRENG +DN    PP        +V    +S  K D T + K
Sbjct: 207 KNSTTTFVEPETPKVE-IRENGNLDNSIETPPQQSPSGSSMVSHESDSSSKKDDTKSDK 264


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 425 QNTEGTEVPPQTQRLQTIRENGIIDNP-NGPPLYGVKWKKLVFGSINSIRKPDVTAAAK 252
           +N+  T V P+T +++ IRENG +DN    PP        +V    +S  K D T + K
Sbjct: 275 KNSTTTFVEPETPKVE-IRENGNLDNSIETPPQQSPSGSSMVSHESDSSSKKDDTKSDK 332


>Z22181-13|CAA80184.3|  632|Caenorhabditis elegans Hypothetical
           protein ZK632.7 protein.
          Length = 632

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 320 KWKKLVFGSINSIRKPDVTAAAKGSSSLISYITHKYYSI 204
           +WKKLV G++  +R+  +   A   SSLI    + YY +
Sbjct: 289 QWKKLVHGNVVPLREVLINCRAFDDSSLI--FAYDYYPL 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,244,861
Number of Sequences: 27780
Number of extensions: 287078
Number of successful extensions: 844
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)