Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30352
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.26 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   0.81 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   3.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   10.0 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   10.0 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   10.0 

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -2

Query: 431 TVQNTEGTEVPPQTQRLQTIRENGIIDNPNGPPLYGVKWKK 309
           TV    G E+ P TQ +   R      N  G P+  V W K
Sbjct: 303 TVTAPLGAEIEPSTQTIDFGRPATFTCNVRGNPIKTVSWLK 343


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 318 FDSIQRRAVRIVDNPILTDRLEPLGL 395
           +DSI+ R   I D   +T+   PLGL
Sbjct: 167 YDSIEARDSAIFDGDFITENNLPLGL 192


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 448 HSPWNIRYKIQREPKSL 398
           H PWN    +QR  K +
Sbjct: 462 HEPWNAPLNVQRAAKCI 478


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 290 NSIRKPDVTAAAKGSSSLISYITHKY 213
           N I  PDV  AAK +  L   + H++
Sbjct: 73  NIIAIPDVVEAAKDADILTFVVPHQF 98


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 317 WKKLVFGSINSIR 279
           WK   F SINSIR
Sbjct: 97  WKSSEFDSINSIR 109


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 489 KNEMPVSSRTIPQSTPHGTYGTKYRGN-RSPSADPEAPNDP 370
           +++ P S    PQ +PH +     RG+  +PS  P     P
Sbjct: 12  QSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = -2

Query: 455 LRALPMEHTVQNTEGTEVPPQTQRLQTIRENGIIDNPNGPPLYGVK 318
           L A    HT +   G         L  I +  +I   N P  YG+K
Sbjct: 16  LNATNSPHTCRTKNGDYTKIMPDILTAIGQTPLIKLNNIPKSYGIK 61


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 402 PSADPEAPNDP*EWD 358
           P +DP  P+D   WD
Sbjct: 661 PDSDPPPPDDISGWD 675


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 434 HTVQNTEGTEVPPQTQRLQTIRENGIIDNPN 342
           H   NT+G  +   TQR Q  +++ ++  P+
Sbjct: 164 HPELNTQGIALADLTQRAQIGQKHKLLIGPS 194



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -1

Query: 186 WYTASSLWPTI 154
           WY+ +S WP +
Sbjct: 433 WYSLASSWPAL 443


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 431 TVQNTEGTEVPPQTQRLQTIRENGIIDNPNGPPLYGVKWKK 309
           T+      +V P+ Q  +   E  I  +  G PL  V+W K
Sbjct: 397 TIHTIPEVKVTPRFQAKRLKEEANIRCHVAGEPLPRVQWLK 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,548
Number of Sequences: 438
Number of extensions: 3732
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)