Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30350
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical pr... 113 5e-26
AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein. 113 5e-26
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 87 5e-18
U97013-5|AAB52338.1| 142|Caenorhabditis elegans Calponin protei... 86 2e-17
AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin prot... 81 5e-16
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr... 54 5e-08
U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical pr... 43 1e-04
U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav (... 42 3e-04
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (... 42 3e-04
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein. 42 3e-04
AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ... 33 0.12
Z82264-10|CAB54196.1| 384|Caenorhabditis elegans Hypothetical p... 30 0.85
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein. 30 1.1
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 30 1.1
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical... 29 2.0
Z81131-2|CAB03425.1| 349|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF003151-2|AAK18919.3| 277|Caenorhabditis elegans Prion-like-(q... 28 4.6
Z81553-11|CAC14333.1| 311|Caenorhabditis elegans Hypothetical p... 27 6.0
Z66561-7|CAB54206.2| 419|Caenorhabditis elegans Hypothetical pr... 27 6.0
U88170-3|AAB42247.1| 338|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF304127-1|AAG50240.1| 419|Caenorhabditis elegans innexin protein. 27 6.0
Z83102-10|CAB05469.2| 420|Caenorhabditis elegans Hypothetical p... 27 8.0
Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical p... 27 8.0
Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical p... 27 8.0
AL032664-1|CAA21769.2| 420|Caenorhabditis elegans Hypothetical ... 27 8.0
>Z79755-6|CAB02104.1| 192|Caenorhabditis elegans Hypothetical
protein F43G9.9 protein.
Length = 192
Score = 113 bits (273), Expect = 5e-26
Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Frame = +3
Query: 42 NKDQEQEVLTWISDVLGEPLPNGAYED----VLRDGVILCKLANKLAPGSVKKIQERGTN 209
+K+ E+L W+ +V G+ D V +DG +LC LAN L PGSVKK+
Sbjct: 28 DKNLAGEILQWVQNVTGQSFDTQGDADNLVKVFQDGSLLCTLANSLKPGSVKKVNTSAMA 87
Query: 210 FQLMENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQ 389
F+ MENI F ++Y V + E+FQT DL+E ++ V +CL +L R ++K+ F
Sbjct: 88 FKKMENISFFLKFAEEY-VQKSELFQTVDLYEGQDPNAVLICLASLARKSEKN--FGRSG 144
Query: 390 LGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSG 506
LGPK A + R +T+EQL+A + + LQMG NKGA+ SG
Sbjct: 145 LGPKEAQGDRREWTDEQLKAGHNVIGLQMGSNKGATASG 183
>AF169201-2|AAF01679.1| 192|Caenorhabditis elegans CPN-1 protein.
Length = 192
Score = 113 bits (273), Expect = 5e-26
Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Frame = +3
Query: 42 NKDQEQEVLTWISDVLGEPLPNGAYED----VLRDGVILCKLANKLAPGSVKKIQERGTN 209
+K+ E+L W+ +V G+ D V +DG +LC LAN L PGSVKK+
Sbjct: 28 DKNLAGEILQWVQNVTGQSFDTQGDADNLVKVFQDGSLLCTLANSLKPGSVKKVNTSAMA 87
Query: 210 FQLMENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQKHPEFTGPQ 389
F+ MENI F ++Y V + E+FQT DL+E ++ V +CL +L R ++K+ F
Sbjct: 88 FKKMENISFFLKFAEEY-VQKSELFQTVDLYEGQDPNAVLICLASLARKSEKN--FGRSG 144
Query: 390 LGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSG 506
LGPK A + R +T+EQL+A + + LQMG NKGA+ SG
Sbjct: 145 LGPKEAQGDRREWTDEQLKAGHNVIGLQMGSNKGATASG 183
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 87.4 bits (207), Expect = 5e-18
Identities = 59/159 (37%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Frame = +3
Query: 60 EVLTWISDVLGEPLP--------NGAYEDVLRDGVILCKLANKLAPGS-VKKIQERGTNF 212
EVL WI +V GE + ++L+DGV+LCKL KL P V ++ F
Sbjct: 29 EVLKWIENVTGERFSFDVTTCESSTDVSNLLKDGVMLCKLIEKLDPSCRVVYNKKPKMAF 88
Query: 213 QLMENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQ-KHPEFTGPQ 389
+MENI F AA K++GV E FQT DL+E + +V CL L + Q + P
Sbjct: 89 PMMENISNFLAAAKQFGVMEISCFQTVDLYENKQCYKVIECLRLLAAVAQSRSSHLEHPA 148
Query: 390 LGPKMADKNERTFTEEQLRAHNAELNLQMGFNKGASQSG 506
K+A + R F E +R + LQ G NK ASQ G
Sbjct: 149 WVVKLAQSSPRQFPEAVMRRGEMVIPLQYGTNKCASQKG 187
>U97013-5|AAB52338.1| 142|Caenorhabditis elegans Calponin protein 3
protein.
Length = 142
Score = 85.8 bits (203), Expect = 2e-17
Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Frame = +3
Query: 63 VLTWISDVLGEPLPNGAYED----VLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENI 230
+L WI + GE + D +L+DG +LCK AN + GS+KK+Q+ + F MENI
Sbjct: 30 LLEWIKKLSGENISTSGERDNFHNLLKDGTLLCKAANGIEAGSIKKVQKPISTFACMENI 89
Query: 231 QRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQK 365
F KK GVP EE FQ+ +L E R++ V + L +LGR+ QK
Sbjct: 90 NAFVEFAKKQGVPNEETFQSVELVEGRDLFSVCVTLLSLGRVLQK 134
>AF039711-7|AAB96713.3| 154|Caenorhabditis elegans Calponin protein
4 protein.
Length = 154
Score = 81.0 bits (191), Expect = 5e-16
Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 4/105 (3%)
Frame = +3
Query: 63 VLTWISDVLGEPLPNGA----YEDVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENI 230
+L WI D+ E A + + L+DG LCKL N + GSVKKI + +NF +ENI
Sbjct: 33 LLEWIRDLTKEDFDCEASRDNFREQLKDGQRLCKLVNAIKAGSVKKIMKPISNFNCLENI 92
Query: 231 QRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQK 365
+F A + GV +EE FQ+ DLF+ R++ VT+ L +L R +K
Sbjct: 93 NQFSTAARSLGVKDEETFQSVDLFDGRDLFSVTVTLQSLARKVEK 137
>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical
protein F09C3.1 protein.
Length = 1391
Score = 54.4 bits (125), Expect = 5e-08
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 14/117 (11%)
Frame = +3
Query: 57 QEVLTWISDVLGEP--LPNGAYEDVLRDGVILCKLANKLAPGSV----------KKIQER 200
+EV TW+S+ L + +P E+ LR+GV+L +L N AP V +K ++
Sbjct: 49 EEVRTWLSECLNDDTLVPTTDLEENLRNGVLLARLGNSFAPEVVPEKGIFDIRQEKYRQN 108
Query: 201 GTN--FQLMENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQVTLCLYALGRITQK 365
++ +NI +++ A++ +PE I +TAD+FE RN+ V CL+AL + +
Sbjct: 109 DATPVYRHSDNIMQWRRAMESVRLPEIFIPETADVFEGRNMKTV-FCLFALATLLHR 164
>U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical
protein C14F11.2 protein.
Length = 638
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +3
Query: 126 LRDGVILCKLANKLAPGSVKKIQERGTNFQLME---NIQRFQAAIKKYGVPEEEIFQTAD 296
L DG LCK NKL P S+ ++ N+ RF +K GVPE + D
Sbjct: 548 LSDGQELCKFINKLHPESISLASSTDSSIATTRSKMNVDRFLQYCRKIGVPETTLCSQMD 607
Query: 297 LFERRNIPQVTLCLYALGRITQ 362
+ +RN +V + + ++ Q
Sbjct: 608 IISKRNPQKVARTVLTVAKLQQ 629
>U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform a protein.
Length = 975
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 114 YEDVLRDGVILCKLANKLAPGSV--KKIQ--ERGTNFQLMENIQRFQAAIKKY-GVPEEE 278
+ VLRDG++LC+LAN L P + KKI + + F NI F K Y + + +
Sbjct: 32 FASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDAD 91
Query: 279 IFQTADLFERRNIPQV 326
+F DL+ +V
Sbjct: 92 LFTAEDLYYMNGFQKV 107
>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform b protein.
Length = 1007
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 114 YEDVLRDGVILCKLANKLAPGSV--KKIQ--ERGTNFQLMENIQRFQAAIKKY-GVPEEE 278
+ VLRDG++LC+LAN L P + KKI + + F NI F K Y + + +
Sbjct: 64 FASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDAD 123
Query: 279 IFQTADLFERRNIPQV 326
+F DL+ +V
Sbjct: 124 LFTAEDLYYMNGFQKV 139
>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
Length = 1007
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 114 YEDVLRDGVILCKLANKLAPGSV--KKIQ--ERGTNFQLMENIQRFQAAIKKY-GVPEEE 278
+ VLRDG++LC+LAN L P + KKI + + F NI F K Y + + +
Sbjct: 64 FASVLRDGILLCRLANTLVPNGIDQKKIMRTNQPSPFLCCNNINYFAMFCKTYFNLEDAD 123
Query: 279 IFQTADLFERRNIPQV 326
+F DL+ +V
Sbjct: 124 LFTAEDLYYMNGFQKV 139
>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
protein Y66H1B.3 protein.
Length = 1084
Score = 33.1 bits (72), Expect = 0.12
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +3
Query: 42 NKDQ--EQEVLTWISDVL-GEPLPNGAYEDVLRDGVILCKLANKLAPGSVKKIQERGTNF 212
NK++ +Q++L WI + L G P+ N + DGV L L N +APG+++ + N
Sbjct: 147 NKEETPKQKLLNWIRNRLPGMPISN--FTSDWNDGVALGALVNSMAPGALEDWENWSPN- 203
Query: 213 QLMENIQR 236
+EN ++
Sbjct: 204 DALENTEK 211
>Z82264-10|CAB54196.1| 384|Caenorhabditis elegans Hypothetical
protein C49C3.10 protein.
Length = 384
Score = 30.3 bits (65), Expect = 0.85
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +3
Query: 117 EDVLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTAD 296
+D + +++ + P ++ E NF L N+ ++QA I Y + +FQ
Sbjct: 228 KDHIDQFILMVQFLGNAGPSFYSQMNEHARNFLLRYNLDQYQAPINFYSRFPDTVFQGVL 287
Query: 297 LFE 305
FE
Sbjct: 288 QFE 290
>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
Length = 1751
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 12 RFRLHTMPARNKDQEQEVLTWISDVLGEPLPNGAYEDV---LRDGVILCKLANKL 167
RFR H K Q+ WI+ L E +G ED+ +RDGV+LC L L
Sbjct: 15 RFRPHE---DEKAQKNTFTRWINFHLEEHSSSGRIEDLFEDIRDGVLLCHLIEVL 66
Score = 28.3 bits (60), Expect = 3.4
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +3
Query: 18 RLHTMPARNKDQEQEVLTWISDVLGEPLPNGAYEDV---LRDGVILCKLANKLAPGSVKK 188
+L P + + EQ L WI+ +G+ + E++ RDG++ C L ++ P +
Sbjct: 214 KLTAQPVK-QSVEQVFLRWINAEIGDLVGGRRVENMDKQWRDGILFCALVSRWRPDVIS- 271
Query: 189 IQERGTNFQLMENIQ-RFQAAIKKYGV 266
TN +N++ F A + GV
Sbjct: 272 -MREVTNANPRDNLELAFNLAHQHLGV 297
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 12 RFRLHTMPARNKDQEQEVLTWISDVLGEPLPNGAYEDV---LRDGVILCKLANKL 167
RFR H K Q+ WI+ L E +G ED+ +RDGV+LC L L
Sbjct: 15 RFRPHE---DEKAQKNTFTRWINFHLEEHSSSGRIEDLFEDIRDGVLLCHLIEVL 66
Score = 28.3 bits (60), Expect = 3.4
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +3
Query: 18 RLHTMPARNKDQEQEVLTWISDVLGEPLPNGAYEDV---LRDGVILCKLANKLAPGSVKK 188
+L P + + EQ L WI+ +G+ + E++ RDG++ C L ++ P +
Sbjct: 214 KLTAQPVK-QSVEQVFLRWINAEIGDLVGGRRVENMDKQWRDGILFCALVSRWRPDVIS- 271
Query: 189 IQERGTNFQLMENIQ-RFQAAIKKYGV 266
TN +N++ F A + GV
Sbjct: 272 -MREVTNANPRDNLELAFNLAHQHLGV 297
>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
protein Y105C5B.2 protein.
Length = 1044
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -3
Query: 220 MSWKLVPLSWIFFTDPGANLLANLQRITPSLSTSSYAPFGSGS 92
M W+ VPL I F D G +L A+ + T S + +SY+ SG+
Sbjct: 440 MPWR-VPLDSISFDDNGGSLSASRRVSTISTARASYSSIFSGN 481
>Z81131-2|CAB03425.1| 349|Caenorhabditis elegans Hypothetical
protein T24D1.3 protein.
Length = 349
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 155 GQQISSWISEKNPRERNQLPAHGE 226
G S+ I++++PR RNQ +HGE
Sbjct: 250 GPSTSTGITDRHPRRRNQDGSHGE 273
>AF003151-2|AAK18919.3| 277|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 24
protein.
Length = 277
Score = 27.9 bits (59), Expect = 4.6
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +3
Query: 150 KLANKLAPGSVKK-IQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTADLFERRNIPQV 326
K NK KK I +RG QL ++ ++ K VP+E + + E IP V
Sbjct: 193 KWTNKQVEDMFKKSIDDRGDEIQLEDDFKKIDKNYKTQSVPQESLRTLSARKEVEKIPFV 252
Query: 327 TLCLYALGRITQKHP 371
+G T P
Sbjct: 253 AGKSSGVGAKTTASP 267
>Z81553-11|CAC14333.1| 311|Caenorhabditis elegans Hypothetical
protein F56H6.13 protein.
Length = 311
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 411 KNERTFTEEQLRAHNAELNLQMGFNKGASQ 500
+N+R T + AH A L+ GFN+G S+
Sbjct: 170 QNDRNMTFILMEAHAAPLSWNCGFNEGVSK 199
>Z66561-7|CAB54206.2| 419|Caenorhabditis elegans Hypothetical
protein F08G12.10 protein.
Length = 419
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -2
Query: 287 LEYFFFWYSVFLDCRLEPLNVLHELEVGSSLLDFFH*SRS*FVGQFAKDHTVP*HILVC 111
+ YF ++C L+ + + H L+V FFH F G K+ ++ I++C
Sbjct: 184 INYFLLKLGFIVNCILQMVLLKHFLDVDDYFWGFFHLWNVEFKGTAEKEDSIFPRIVLC 242
>U88170-3|AAB42247.1| 338|Caenorhabditis elegans Hypothetical
protein C10G11.7 protein.
Length = 338
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 129 RDGVILCKLANKLAPGSVK 185
+DG +L KLAN L PG+V+
Sbjct: 162 KDGDVLAKLANALEPGAVE 180
>AF304127-1|AAG50240.1| 419|Caenorhabditis elegans innexin protein.
Length = 419
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -2
Query: 287 LEYFFFWYSVFLDCRLEPLNVLHELEVGSSLLDFFH*SRS*FVGQFAKDHTVP*HILVC 111
+ YF ++C L+ + + H L+V FFH F G K+ ++ I++C
Sbjct: 184 INYFLLKLGFIVNCILQMVLLKHFLDVDDYFWGFFHLWNVEFKGTAEKEDSIFPRIVLC 242
>Z83102-10|CAB05469.2| 420|Caenorhabditis elegans Hypothetical
protein C54C8.11 protein.
Length = 420
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 143 PLQIGQQISSWISEKNPRERNQLPAHGEHSKVPSG 247
P+ G +WI + R R +L +GE+ K+ +G
Sbjct: 297 PMPGGFDAKAWIHKNYRRTRGKLGKYGENQKIDNG 331
>Z48055-11|CAI58650.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 153 LANKLAPGSVKKIQERGTNFQLMENIQRFQAAIKKYGVPE---EEIFQ 287
+ N L KK + R N+ L QRF+ +I+KYGV E EEI +
Sbjct: 955 MMNMLESVKKKKHESRDMNWLL----QRFEDSIRKYGVAELTTEEILE 998
>Z29443-14|CAI59118.1| 1013|Caenorhabditis elegans Hypothetical
protein T07C4.10 protein.
Length = 1013
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 153 LANKLAPGSVKKIQERGTNFQLMENIQRFQAAIKKYGVPE---EEIFQ 287
+ N L KK + R N+ L QRF+ +I+KYGV E EEI +
Sbjct: 955 MMNMLESVKKKKHESRDMNWLL----QRFEDSIRKYGVAELTTEEILE 998
>AL032664-1|CAA21769.2| 420|Caenorhabditis elegans Hypothetical
protein C54C8.11 protein.
Length = 420
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 143 PLQIGQQISSWISEKNPRERNQLPAHGEHSKVPSG 247
P+ G +WI + R R +L +GE+ K+ +G
Sbjct: 297 PMPGGFDAKAWIHKNYRRTRGKLGKYGENQKIDNG 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,558,472
Number of Sequences: 27780
Number of extensions: 299415
Number of successful extensions: 982
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -