Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30350
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.61 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   3.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   5.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   5.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   10.0 

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +3

Query: 123 VLRDGVILCKLANKLAPGSVKKIQERGTNFQLMENIQRFQAAIKKYGVPEEEIFQTADLF 302
           + R+ V+L  L   L   SV  IQ+ GT F     ++RF      Y  P +E  +T  + 
Sbjct: 1   MFREFVLLASLLY-LGNESVHGIQKWGTQFGQAPLLERFFWRTLDYAYP-DEASKTMAMM 58

Query: 303 ERRNIPQVTL 332
           +   IP+  L
Sbjct: 59  KGEYIPENAL 68


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 433 KNNFGPTTLNLTSKWASIRAPPSPVMVA 516
           + NF      L  +W +   P SP++VA
Sbjct: 430 EENFKDAKKYLPERWTTPTTPHSPLLVA 457


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 403 WLIRTNVPSRKNNFGPTTLNLTSKWASIRAPPSPV 507
           WL ++ VP+R +    T L + ++ + I A   PV
Sbjct: 264 WLDQSAVPARVSLGVTTLLTMATQTSGINASLPPV 298


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 403 WLIRTNVPSRKNNFGPTTLNLTSKWASIRAPPSPV 507
           WL ++ VP+R +    T L + ++ + I A   PV
Sbjct: 264 WLDQSAVPARVSLGVTTLLTMATQTSGINASLPPV 298


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 197 ERNQLPAHGE 226
           E NQLP HG+
Sbjct: 49  ENNQLPTHGK 58


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 426 FTEEQLRAHNAELNLQMGFNK 488
           FT+++    + ELNLQ  FN+
Sbjct: 17  FTKQKKVKEDTELNLQTIFNE 37


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 129 RDGVILCKLANKLAPGSVKKIQ 194
           R+G  LC+ +N +  G  K +Q
Sbjct: 780 REGFYLCQASNGIGSGIGKVVQ 801


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 129 RDGVILCKLANKLAPGSVKKIQ 194
           R+G  LC+ +N +  G  K +Q
Sbjct: 776 REGFYLCQASNGIGSGIGKVVQ 797


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 381 GPQLGPKMADKNERTFTEE 437
           GP+ GPK+ +K +    +E
Sbjct: 203 GPEKGPKVPEKKKEDEIDE 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,821
Number of Sequences: 438
Number of extensions: 3954
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)