Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30347
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 332 7e-92
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 328 2e-90
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 325 1e-89
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 325 1e-89
SB_56| Best HMM Match : Actin (HMM E-Value=0) 324 3e-89
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 186 1e-47
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 155 3e-38
SB_54| Best HMM Match : Actin (HMM E-Value=0) 107 4e-24
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 93 1e-19
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 79 2e-15
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 63 1e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 59 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 56 1e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 2e-08
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 49 3e-06
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 40 0.002
SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 0.74
SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6) 30 0.98
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 30 1.3
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7) 29 1.7
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 28 4.0
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 28 5.3
SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 28 5.3
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9) 28 5.3
SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 27 6.9
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2) 27 9.2
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 332 bits (817), Expect = 7e-92
Identities = 153/155 (98%), Positives = 155/155 (100%)
Frame = +2
Query: 50 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 229
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 230 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 409
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 410 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLD 514
TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+D
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 155
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 328 bits (806), Expect = 2e-90
Identities = 150/155 (96%), Positives = 154/155 (99%)
Frame = +2
Query: 50 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 229
M DDD+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 230 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 409
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 410 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLD 514
TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+D
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 155
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 325 bits (799), Expect = 1e-89
Identities = 150/155 (96%), Positives = 154/155 (99%)
Frame = +2
Query: 50 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 229
M DD++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 230 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 409
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 410 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLD 514
TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+D
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 155
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 325 bits (799), Expect = 1e-89
Identities = 150/153 (98%), Positives = 153/153 (100%)
Frame = +2
Query: 56 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 235
+DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 236 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 415
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 416 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLD 514
IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+D
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 154
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 324 bits (795), Expect = 3e-89
Identities = 149/153 (97%), Positives = 153/153 (100%)
Frame = +2
Query: 56 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 235
+D+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 236 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 415
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 416 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLD 514
IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+D
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 154
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 186 bits (452), Expect = 1e-47
Identities = 84/89 (94%), Positives = 86/89 (96%)
Frame = +2
Query: 56 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 235
DDDVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 236 RGILTLKYPIEHGIITNWDDMEKIWHHTF 322
RGILTLKYPIEHGI+TNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 71.7 bits (168), Expect = 3e-13
Identities = 34/40 (85%), Positives = 37/40 (92%)
Frame = +2
Query: 395 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLD 514
N + M +IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+D
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 117
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 155 bits (375), Expect = 3e-38
Identities = 72/152 (47%), Positives = 102/152 (67%), Gaps = 3/152 (1%)
Frame = +2
Query: 68 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 241
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 242 ILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 418
+L + YP+++GI+ NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 419 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLD 514
MFE + +Y+AIQAVL+LYA G TG+V+D
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVID 158
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 107 bits (258), Expect = 4e-24
Identities = 49/71 (69%), Positives = 59/71 (83%)
Frame = +2
Query: 302 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 481
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 482 ASGRTTGIVLD 514
ASGRTTG V D
Sbjct: 2189 ASGRTTGTVFD 2199
Score = 60.5 bits (140), Expect = 8e-10
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +2
Query: 17 ASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 175
AS T+ F+ V +V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2080 ASVTKQQAAFEQNGGTV--VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 93.1 bits (221), Expect = 1e-19
Identities = 39/55 (70%), Positives = 50/55 (90%)
Frame = +2
Query: 350 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLD 514
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLD 180
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 79.4 bits (187), Expect = 2e-15
Identities = 33/85 (38%), Positives = 57/85 (67%)
Frame = +2
Query: 260 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 439
PI+ G+I +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 440 PAMYVAIQAVLSLYASGRTTGIVLD 514
PA ++ +VL+ +A+GR+ G+V+D
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVID 87
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +2
Query: 416 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLD 514
IMFE FNSPA+YVAIQAVLSLYASGRTTG+V D
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFD 33
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +2
Query: 74 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 175
LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.4 bits (130), Expect = 1e-08
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +2
Query: 11 IPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 190
IP + + ++ FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 683 IPRTKKRRYS-FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
Query: 191 --MGQKD-SYVGDEAQSKRGILTL 253
+ KD GD A +K G++ L
Sbjct: 742 DNVNVKDYKKYGDAAVAKSGVMHL 765
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +2
Query: 188 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 367
G+ D ++GDEA K T K+PI H I+ +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 50.8 bits (116), Expect = 7e-07
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = -3
Query: 172 VARATHDGREDGAGRVVAGETGLAHAGAIVDYKRSNIVV 56
+AR+ DG E+G+G +V+GETGLAH GAI+D + +I+V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +2
Query: 65 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 244
+A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 233 MATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKDY 284
Query: 245 LTLKY--PIEHGIITNWDDMEKIWHHTFYNE 331
L Y P + G + NWD ++IW +TF E
Sbjct: 285 SALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +2
Query: 305 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 484
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 485 SGRTTGIV 508
+GIV
Sbjct: 572 YSAVSGIV 579
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 68 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 172
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 81 STMAPACARPVSPATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRP 227
S P+ R TT+P P +PSWV + + W TW RP
Sbjct: 36 SPSKPSDTRIADTTTTKPFPGYQPSWVKVK----YGAWYLNPKTWKARP 80
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 31.9 bits (69), Expect = 0.32
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 45 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 149
S C T+L+R T+ APA +P+SPAT P +R
Sbjct: 632 SSCLATLLVRPLETIPAPAPTKPISPATPASGPPTR 667
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.1 bits (67), Expect = 0.56
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 251 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 403
L+ P + ++T+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.7 bits (66), Expect = 0.74
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 392 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 508
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)
Length = 697
Score = 30.3 bits (65), Expect = 0.98
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 45 SRCATTMLLR-L*STMAPACARPVSPATTRPAPSSR 149
S C T+L+R L +T APA P SPAT P R
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPATPASGPPIR 56
>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
Length = 645
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -3
Query: 412 GHLLPVGLGVEGGFGEQHGVLLGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSL 233
G +L V LG+ GFG V G + + GV+P L+ I + D ++ + +D SL
Sbjct: 157 GGILAVALGILAGFGLAMAV---GTPFISLAGVLPFLILGIGIDDMFIIINEMDRQDNSL 213
Query: 232 AL 227
++
Sbjct: 214 SV 215
>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 682
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 36 TQSSRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 149
T S C T+L+R T+ APA P SPAT P R
Sbjct: 109 TSLSSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 147
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 380 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 508
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 30 KHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPS 155
K T ++ ATT + +T PA P +P TT P ++ P+
Sbjct: 63 KPTNTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTPT 104
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 30 KHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPS 155
K T ++ ATT + +T PA P P TT P ++ P+
Sbjct: 133 KPTTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPT 174
>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 45 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 149
S C T+L+R T+ APA P SPAT P R
Sbjct: 72 SSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 107
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 177 PWWRGRPTMDGKTARGASSPAKPALHMPEP 88
P W + G T R PAKP+L++P P
Sbjct: 530 PKWLQQVKDGGNTNRRTRIPAKPSLNLPSP 559
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 45 SRCATTMLLR-L*STMAPACARPVSPAT 125
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1411
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 45 SRCATTMLLR-L*STMAPACARPVSPAT 125
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 461
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 45 SRCATTMLLR-L*STMAPACARPVSPAT 125
S C T+L+R L +T APA P SPAT
Sbjct: 14 SSCLATLLVRPLETTPAPAPTTPTSPAT 41
>SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -1
Query: 471 STAWMATYMAGELKVSNMIWV---IFSLLALGL 382
S AW+ + + EL+ S +WV IFS+L +G+
Sbjct: 163 SVAWLCSLLYLELEASLYVWVPSLIFSILIIGV 195
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 47 KMCDDDVAALVVDNG-SGMCKAGFAGD 124
++CD D + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 171 WRGRPTMDGKTARGASSPAKPALHMPEP 88
W + G T R PAKPAL++P P
Sbjct: 72 WLQQVKDGGNTNRRTRIPAKPALNLPSP 99
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 147 GKTARGASSPAKPALHMPEP 88
G T R PAKPAL++P P
Sbjct: 80 GNTNRRTRIPAKPALNLPSP 99
>SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)
Length = 782
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 45 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 149
S C T+++R T+ APA P SPAT P R
Sbjct: 51 SSCLATLVVRPLETIPAPAPTTPTSPATPASGPPIR 86
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 27.1 bits (57), Expect = 9.2
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 45 SRCATTMLLR-L*STMAPACARPVSPAT 125
S C T L+R L +T APA P SPAT
Sbjct: 523 SSCLATFLVRTLETTPAPAPTTPTSPAT 550
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,659,675
Number of Sequences: 59808
Number of extensions: 339092
Number of successful extensions: 1182
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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