Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30343
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    50   2e-07
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    26   2.9  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.7  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   8.9  

>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 2/142 (1%)
 Frame = +3

Query: 27  NNIVNKLKSNNYDNINIVIGNESCDLDSAVCSIVYALYLNWQHNQIKCKVCTKDKRGASS 206
           N ++N    ++  + + V GNES DLDS   SIVYA  L  Q  Q+              
Sbjct: 16  NLLLNASTVSSAPSFSFVSGNESADLDSCASSIVYAYCL--QRKQL-------------- 59

Query: 207 KDDIFVPILNMVRQDFALKTEVMYIFKKLGITEGDLIFRNDYDLCSLLRDSKCN-VVLVD 383
              I VP  N+ R++  L+ E+ Y+     I+  D++F +  D+  L +    N + LVD
Sbjct: 60  -GRIVVPFFNIPRKELRLRPELSYLLNLASISSDDIVFLD--DIVKLPKRIFSNPIYLVD 116

Query: 384 HHVLAANDV-FLSPFVSEIIDH 446
           H+ L   D+   +  ++ IIDH
Sbjct: 117 HNSLDRKDLENFNGSIAGIIDH 138


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 264 TEVMYIFKKLGITEGDLIFRNDYD-LCSLLRDSKCNVVLVDHHVLAANDVFLSPFVSEII 440
           T+++  F +   T G ++  +DY+ LC ++ +     VL   H++ A DVF   F  E I
Sbjct: 759 TDILRNFAESIKTCGPVVLGDDYEKLCEVVME-----VLQKQHIVQAGDVFDDDFEEEDI 813


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 215  IVFGRSTTFVFRAYLAFYLIVLPI*I*SVDN 123
            +++  S  FV+  Y  FYL ++PI +  +D+
Sbjct: 948  LMYTHSEDFVYALYACFYLGLIPIPVPPLDH 978


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 258  LKTEVMYIFKKLGITEGDLIFRNDYDLCSLLRDSK 362
            ++++V +I   L   E  ++F     LCSL +D+K
Sbjct: 1388 MQSKVTHIILNLPDIEAYVLFVKSLQLCSLYKDTK 1422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,551
Number of Sequences: 5004
Number of extensions: 40737
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)