Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30343
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1743 + 39601644-39602023,39602301-39602734,39602828-396030...    38   0.004
11_06_0255 + 21723913-21725304                                         29   2.2  
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911...    29   2.2  
06_03_0291 + 19198302-19198333,19199218-19199734,19200171-192003...    29   2.9  
08_01_0431 + 3779519-3780393,3780402-3780768                           27   8.9  
03_02_0787 + 11180794-11180958,11181051-11181230,11181396-111816...    27   8.9  
02_02_0396 - 9756993-9757540,9757590-9757809,9757929-9758046,975...    27   8.9  

>01_06_1743 +
           39601644-39602023,39602301-39602734,39602828-39603006,
           39603636-39603716,39603828-39603914,39604000-39604006,
           39604241-39604312,39604712-39604792,39605156-39605262
          Length = 475

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +3

Query: 198 ASSKD-DIFVPILNMVRQDFALKTEVMYIFKKLGITEGDLIFRNDYDLCSLLRDSKCNVV 374
           AS +D +  VP++NM R       +  ++   +G+    L+F ++ D+  L+ D + ++V
Sbjct: 287 ASKEDAEAAVPVVNMRRGRMERCRQAAWLLHHVGVDASALLFADEVDMEGLMMDKRVSLV 346

Query: 375 LVDHHVLAAND 407
           +V   VL  ND
Sbjct: 347 VVGQDVLKPND 357


>11_06_0255 + 21723913-21725304
          Length = 463

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 240 PCLISGRKYRLWTKHHVCLSCIPCILSDCVANL 142
           P      K RL+  H V LSC P +  +CVA L
Sbjct: 200 PVEYPAEKLRLFMYHRVILSCSPSVGRECVALL 232


>11_04_0442 - 17790811-17790889,17791047-17791114,17791144-17791166,
            17791210-17795913,17797414-17797624,17798478-17798666
          Length = 1757

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
 Frame = +3

Query: 99   DLDSAVCSIVYALYL-NWQHNQ-------IKCKVCTKDKRGASSKDDIFVPILNMVRQDF 254
            +L  A CS  +     NW  N        IK  VCT  K   SSK D+F+P   +++  F
Sbjct: 1424 ELSKADCSAFWKFVATNWGQNMNKLLSGCIKVPVCTDGKIILSSKKDVFIPDDLLLKDLF 1483

Query: 255  A-LKTEVMYIF 284
            + L  + ++I+
Sbjct: 1484 SKLSQQAVFIW 1494


>06_03_0291 +
           19198302-19198333,19199218-19199734,19200171-19200383,
           19201067-19201111,19201671-19201945,19202041-19202152,
           19202453-19202539,19202727-19202963,19204127-19204825
          Length = 738

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +3

Query: 90  ESCDLDSAVCSIVYALYLNWQHNQIKCKVCTK-DKRGASSKDDIFVPILNMVRQDFALKT 266
           + C  +S VC+  Y LY   + N I    C   D         I+VP LN V Q      
Sbjct: 289 DMCSNNSTVCNQAY-LYCGDKENSILRTACLPIDSNDIDPNFGIYVPALNNVSQSTNFLA 347

Query: 267 EVMY 278
           ++ Y
Sbjct: 348 KLFY 351


>08_01_0431 + 3779519-3780393,3780402-3780768
          Length = 413

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -1

Query: 213 RLWTKHHVCLSCIPCILSDCVANL 142
           R W  H V LSC P   S CVA L
Sbjct: 174 REWAYHQVVLSCSPAEGSACVALL 197


>03_02_0787 +
           11180794-11180958,11181051-11181230,11181396-11181611,
           11181693-11181875,11182013-11182234,11182434-11182550,
           11182682-11182825,11183198-11183299,11183762-11183830,
           11184283-11184516
          Length = 543

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 128 LRSIFKLATQSDKMQGMHERQTWCFVQRRYFRPDIKHGQTG 250
           +  +F L  Q + +    +R  W ++   YF+  +K G+ G
Sbjct: 329 ISKLFNLFVQFNNVLTDFDRDMWTYISLGYFKQIVKAGEVG 369


>02_02_0396 -
           9756993-9757540,9757590-9757809,9757929-9758046,
           9758156-9758431,9758569-9758609
          Length = 400

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/56 (19%), Positives = 26/56 (46%)
 Frame = +3

Query: 93  SCDLDSAVCSIVYALYLNWQHNQIKCKVCTKDKRGASSKDDIFVPILNMVRQDFAL 260
           +C   SAV +++ +++ +W    IK  + T       +   +++P +  V   F +
Sbjct: 172 ACPHVSAVAALLKSVHPDWSPAMIKSAIVTTGMYSCHTTSSVYIPYMASVTDRFGM 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,296,787
Number of Sequences: 37544
Number of extensions: 231697
Number of successful extensions: 574
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)