Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30343
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    22   4.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.5  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   7.5  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   10.0 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   10.0 

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +3

Query: 345 LLRDSKCNVVLVDHHVLAANDVFLSPFVSEIIDHRP 452
           L+  SKC  V  D   L A    L P    IID  P
Sbjct: 24  LIIPSKCEAVSNDRQSLEARSADLVPEPRYIIDVPP 59


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 15  NEFLNNIVNKLKSNNYDN 68
           N   NN  N   +NNY+N
Sbjct: 331 NNNYNNNYNNYNNNNYNN 348



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 27  NNIVNKLKSNNYDNIN 74
           NN  N   +NNY+N N
Sbjct: 327 NNYNNNNYNNNYNNYN 342


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +3

Query: 345 LLRDSKCNVVLVDHHVLAANDVFLSPFVSEIIDHRP 452
           L+  SKC  V  D   L A    L P    IID  P
Sbjct: 24  LIIPSKCEAVSNDMQPLEARSADLVPEPRYIIDVPP 59


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 107 FSGLLHCLRSIFK 145
           F+GL +CL  IFK
Sbjct: 156 FTGLGNCLTKIFK 168


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 107 FSGLLHCLRSIFK 145
           F+GL +CL  IFK
Sbjct: 156 FTGLGNCLTKIFK 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,134
Number of Sequences: 438
Number of extensions: 2781
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)