Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30343
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17205.1 68416.m02196 HECT-domain-containing protein / ubiqui...    29   1.9  
At1g45130.1 68414.m05173 beta-galactosidase, putative / lactase,...    28   4.3  
At2g29680.2 68415.m03608 cell division control protein CDC6, put...    27   9.9  
At2g29680.1 68415.m03607 cell division control protein CDC6, put...    27   9.9  

>At3g17205.1 68416.m02196 HECT-domain-containing protein /
           ubiquitin-transferase family protein weak similarity to
           ubiquitin-protein ligase 2 [Arabidopsis thaliana]
           GI:7108523; contains Pfam profile PF00632: HECT-domain
           (ubiquitin-transferase)
          Length = 873

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 45  LKSNNYDNINIVIGNESCDLDSAVCSIVYALYLNWQHNQIKCKVCTKDKRGASSKDDIFV 224
           L  N  D  N+V+    C LD A+   + A +       +K     + ++G+S +DD+ +
Sbjct: 165 LLGNTLDTANVVLSQPECSLDMAIDIALVATFFLETLPPVKSSE-GESRQGSSDEDDMLI 223


>At1g45130.1 68414.m05173 beta-galactosidase, putative / lactase,
          putative similar to beta-galactosidase [Lycopersicon
          esculentum] GI:7939619, beta-galactosidase BG1
          GI:15081596 from [Vitis vinifera]; contains Pfam
          profile PF01301: Glycosyl hydrolases family 35
          Length = 732

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -3

Query: 79 TILMLS*LLDFNLFTMLFKNSFIVCS 2
          TIL+LS +L F L TML  +S I CS
Sbjct: 4  TILVLSKILTFLLTTMLIGSSVIQCS 29


>At2g29680.2 68415.m03608 cell division control protein CDC6,
           putative almost identical to DNA replication protein
           CDC6 GI:18056480 from [Arabidopsis thaliana];  identical
           to cDNA CDC6 protein (2g29680 gene) GI:18056479
          Length = 508

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 360 KCNVVLVDHHVLAANDVFLSPFVSEI 437
           +C VV +DH + A +  F SP V  I
Sbjct: 382 ECQVVKMDHMIAALSKTFKSPIVDTI 407


>At2g29680.1 68415.m03607 cell division control protein CDC6,
           putative almost identical to DNA replication protein
           CDC6 GI:18056480 from [Arabidopsis thaliana];  identical
           to cDNA CDC6 protein (2g29680 gene) GI:18056479
          Length = 539

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 360 KCNVVLVDHHVLAANDVFLSPFVSEI 437
           +C VV +DH + A +  F SP V  I
Sbjct: 413 ECQVVKMDHMIAALSKTFKSPIVDTI 438


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,419,106
Number of Sequences: 28952
Number of extensions: 203718
Number of successful extensions: 547
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)