Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30339
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    28   0.72 
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    26   2.9  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    25   6.7  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    24   8.9  

>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 84  EKKRLEEANKAKQAEIDRKRAEVRKRMEE 170
           +K+RLEEA++ +  E++R +   RK +EE
Sbjct: 379 KKERLEEASQKRLEEVNRLKNLKRKELEE 407


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 81  DEKKRLEEANKAKQAEIDRKRAEVRKRM 164
           D+K+ + E   A+Q EI RK A   KR+
Sbjct: 32  DKKEEVLERQIAEQTEIARKNATTNKRL 59


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 85  KKSVSRRXIRPNRPKSTASAL 147
           K+  +RR   PNRPK +A  L
Sbjct: 165 KRKTTRRRRTPNRPKKSAEEL 185


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 318 RCXXPXNIDDXXEDTIXRVCKDYH 389
           RC    N +D  + +I  + K+YH
Sbjct: 220 RCVGKGNFEDYWKQSIISILKEYH 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,102,787
Number of Sequences: 5004
Number of extensions: 12751
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)