Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30339
(438 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59487| Best HMM Match : DUF1014 (HMM E-Value=2.4) 33 0.14
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 32 0.24
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 30 0.96
SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32) 29 1.7
SB_27229| Best HMM Match : 7tm_1 (HMM E-Value=0.0014) 29 1.7
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 29 1.7
SB_47094| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29) 28 2.9
SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07) 28 3.9
SB_54937| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35) 27 5.1
SB_41916| Best HMM Match : DUF164 (HMM E-Value=0.8) 27 5.1
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 27 5.1
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031) 27 6.8
SB_4928| Best HMM Match : DUF590 (HMM E-Value=0) 27 6.8
SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 27 6.8
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 27 8.9
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_32531| Best HMM Match : DUF827 (HMM E-Value=0.54) 27 8.9
>SB_59487| Best HMM Match : DUF1014 (HMM E-Value=2.4)
Length = 176
Score = 32.7 bits (71), Expect = 0.14
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3
Query: 81 DEKKRLEEANKAKQAEIDRKRAEVRKRMEEA 173
+E KR+EE NK K+ ++++ E RKR+EEA
Sbjct: 37 EEAKRIEEENKKKE---EKEKEEARKRLEEA 64
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 6/38 (15%)
Frame = +3
Query: 75 AVDEKKRLEEANKAKQ------AEIDRKRAEVRKRMEE 170
A++EK++LEE K ++ AE+++KR E R+R EE
Sbjct: 215 ALEEKRKLEEERKEQERKEKELAELEKKRQEERRRQEE 252
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 29.9 bits (64), Expect = 0.96
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 72 MAVDEKKRLEEANKAKQAEIDRKR---AEVRKRMEE 170
M ++ K+R EE K KQ E +RKR E+++R EE
Sbjct: 606 MELERKRREEEERKRKQEEEERKRKMQMELQRRKEE 641
>SB_56788| Best HMM Match : 7tm_1 (HMM E-Value=4e-32)
Length = 524
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 81 QPPLLLCWFRVSYCKN*KMALRDGLAN 1
QPP +LC F +S C + A+ D AN
Sbjct: 115 QPPTVLCHFHLSSCLTGQTAMNDSKAN 141
>SB_27229| Best HMM Match : 7tm_1 (HMM E-Value=0.0014)
Length = 309
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 81 QPPLLLCWFRVSYCKN*KMALRDGLAN 1
QPP +LC F +S C + A+ D AN
Sbjct: 107 QPPTVLCHFHLSSCLTGQTAMNDSKAN 133
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +3
Query: 81 DEKKRL--EEANKAKQAEIDRKRAEVRKRMEEA 173
D+K+RL EE + K+ E +RK+ E RK+ +EA
Sbjct: 592 DQKERLLEEEKVRLKEEEEERKKQEERKKAKEA 624
>SB_47094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 42 SRTP*TNTTTMAVDEKKRLEEANKAKQAEIDR-KRAEVRKRMEEAS 176
+R+P +++ A +KK EE K +QAE + +RA ++ R+EE++
Sbjct: 31 NRSPVSSSAVQAFLKKK--EEEKKRQQAEAEAARRARIQARLEEST 74
>SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)
Length = 690
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 81 DEKKRLEEANKAKQAEIDRKRAEVRKRMEE 170
+E+K+L EAN+ A+++ K AE++ EE
Sbjct: 529 EERKKLTEANEKFAADLEAKDAELKALKEE 558
>SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)
Length = 349
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 81 DEKKRLEEANKAKQAEIDRKRAEVRKRMEE 170
D+KKRLEE KA++ EI + K EE
Sbjct: 165 DKKKRLEEEQKARKEEIAAQVKSEEKLAEE 194
>SB_54937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 57 TNTTTMAVDEKKRLEEANKAKQAEIDRKRAEVRKRMEEAS 176
T + T +E+ +E+ + +Q E EVR RM+EA+
Sbjct: 41 TESITSHTEERSTIEDTDSHRQYEPRITHEEVRDRMDEAA 80
>SB_42549| Best HMM Match : Peptidase_A17 (HMM E-Value=1e-35)
Length = 1595
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 30 SNSCSRTP*TNTTTMAVDEKKRLEEANKAKQA--EIDRKRAEVRKRMEE 170
S+S RT T + A E +LE+ A Q EIDR+R E+ + +E
Sbjct: 137 SDSSVRTSSTTPSKRAAIEAAKLEQKMIALQRRQEIDRRRDEIERERKE 185
>SB_41916| Best HMM Match : DUF164 (HMM E-Value=0.8)
Length = 391
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 66 TTMAVDEKKRLEEANKAKQAEIDRKRAEVRKRMEE 170
T+ DEK+RLEE +A + KR ++R+ E+
Sbjct: 130 TSDEFDEKQRLEEQMRAVMDKYKYKRRQIRELQED 164
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 84 EKKRLEEANKAKQAEIDRKRAEVRKRME 167
+K +EEA K +Q E +RK E ++R+E
Sbjct: 753 KKIEMEEAKKREQEEKERKEKEEKERIE 780
Score = 26.6 bits (56), Expect = 8.9
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Frame = +3
Query: 84 EKKRLEEANK-AKQAEIDRKR----AEVRKRMEE 170
E K E A + AKQ EIDRKR E+ +R+EE
Sbjct: 785 EAKEREYAERIAKQNEIDRKRREKELEIERRLEE 818
>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
Length = 592
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 78 VDEKKRLEEANKAKQAEIDRKRAEVRKRMEEA 173
++E +RLE + E+ R+ E RK+ EEA
Sbjct: 359 LEEAERLERVRLEAEEEMKRREEERRKKREEA 390
>SB_4928| Best HMM Match : DUF590 (HMM E-Value=0)
Length = 897
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 81 DEKKRLEEANKAKQAEIDRKRAEVRKRMEE 170
+E++ E +KAK A++ +KR + K +EE
Sbjct: 59 EEEESKNEDSKAKAADLAKKREDFEKALEE 88
>SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 1151
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 52 PKPTQQQWRLMKKSVSRRXIRPNRPKSTASA 144
P P ++ R KS SRR P RP +++ A
Sbjct: 996 PNPVEESGRSSAKSKSRRNSGPQRPSASSLA 1026
>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 354 EDTIXRVCKDYHERIARLEDE 416
E+ + +V +DY E+IARL++E
Sbjct: 147 EEQLEQVRRDYEEQIARLQEE 167
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 84 EKKRLE-EANKAKQAEIDRKRAEVRKRMEE 170
EKKR+E E K K+AE + + ++RMEE
Sbjct: 314 EKKRIEEEEQKRKEAEEKKAKEIEQRRMEE 343
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 81 DEKKRLEEANKAKQAEIDRKRAEVRKRMEE 170
+EK++LEE + ++ + RK AE ++ EE
Sbjct: 418 EEKRKLEEQKRKEEEDRRRKEAEEKRIKEE 447
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 81 DEKKRLEEANKAKQAEIDRKRAEVRKRME 167
D+++RL + ++ E +R+R E RKR E
Sbjct: 1063 DDEERLRREEEERRLEEERRREEERKREE 1091
>SB_32531| Best HMM Match : DUF827 (HMM E-Value=0.54)
Length = 341
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 96 LEEANKAKQAEIDRKRAEVRKRMEE 170
+EE NKAK ++RK EV + +E
Sbjct: 287 IEERNKAKMRALERKEQEVMRLRQE 311
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,691,896
Number of Sequences: 59808
Number of extensions: 109268
Number of successful extensions: 391
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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