Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30339
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    31   0.34 
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,...    31   0.34 
At3g07650.2 68416.m00917 zinc finger (B-box type) family protein...    30   0.59 
At3g07650.1 68416.m00916 zinc finger (B-box type) family protein...    30   0.59 
At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N domain-...    29   1.0  
At4g36700.1 68417.m05208 cupin family protein low similarity to ...    29   1.8  
At5g03660.1 68418.m00325 expressed protein low similarity to out...    27   5.5  
At1g11240.1 68414.m01287 expressed protein                             27   5.5  
At5g61320.1 68418.m07695 cytochrome P450, putative Similar to  C...    27   7.3  
At1g26790.1 68414.m03261 Dof-type zinc finger domain-containing ...    27   7.3  
At5g04890.1 68418.m00513 small heat shock-like protein (RTM2) si...    26   9.7  
At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /...    26   9.7  

>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 84  EKKRLEEANKAKQAEIDRKRAEVRKRMEE 170
           E+KR EE  + ++ E  RKR E RKR EE
Sbjct: 546 ERKRREEQERKRREEEARKREEERKREEE 574



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 87  KKRLEEANKAKQAEIDRKRAE--VRKRMEE 170
           KKR EE  + ++ E++RKR E   RKR EE
Sbjct: 531 KKREEERQRKEREEVERKRREEQERKRREE 560



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 81  DEKKRLEEANKAKQAEIDRKRAEVRKRMEEA 173
           +E ++ EE  K ++ E  R+  E +KR EEA
Sbjct: 483 EEARKREEERKREEEEAKRREEERKKREEEA 513



 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 81  DEKKRLEEANKAKQAEIDR-KRAEVRKRMEE 170
           + KKR EEA +A++ E +R K  E+ K+ EE
Sbjct: 505 ERKKREEEAEQARKREEEREKEEEMAKKREE 535



 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 81  DEKKRLEEANKAKQAEID--RKRAEVRKRMEE 170
           + K+R EE  + K+ E +  RKR E RKR EE
Sbjct: 466 EAKRREEEETERKKREEEEARKREEERKREEE 497


>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
            PF04950: Protein of unknown function (DUF663)
          Length = 1147

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 75   AVDEKKRLE-EANKAKQAEIDRKRAEVRKR 161
            A D+KKR E EA KAK  EI++KR    +R
Sbjct: 1100 ATDQKKRKEYEAEKAKNEEINKKRRREERR 1129


>At3g07650.2 68416.m00917 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 30  SNSCSRTP*TNTTTMAVDEKKRLEEANKAKQAEIDRKRAEVRKRME 167
           +N+CS +   N   M   EKK+  + +K  +    + RA+VR+R++
Sbjct: 306 NNACSHSVTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVK 351


>At3g07650.1 68416.m00916 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33206 [Oryza
           sativa]
          Length = 372

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 30  SNSCSRTP*TNTTTMAVDEKKRLEEANKAKQAEIDRKRAEVRKRME 167
           +N+CS +   N   M   EKK+  + +K  +    + RA+VR+R++
Sbjct: 306 NNACSHSVTRNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVK 351


>At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N
           domain-containing protein weak similarity to SP|P45974
           Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)
           {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N
           domain
          Length = 413

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 78  VDEKKRLEEANKAKQAEIDRKRAEVRKRMEE 170
           V+E+KRL    KA++ E  R R ++R+++EE
Sbjct: 227 VNERKRLMFLRKAEKEEEKRAREKIRQKLEE 257


>At4g36700.1 68417.m05208 cupin family protein low similarity to
           preproMP27-MP32 from Cucurbita cv. Kurokawa Amakuri
           [GI:691752]; contains Pfam profile PF00190: Cupin
          Length = 522

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 81  DEKKRLEEANKAKQAEIDRKRAEVRKRMEE 170
           DE+KR  +  K ++ E  R+  E RKR EE
Sbjct: 457 DERKRRHDERKKEEEEAKREEEERRKREEE 486


>At5g03660.1 68418.m00325 expressed protein low similarity to outer
           surface protein F [Borrelia burgdorferi] GI:466482;
           contains Pfam profile PF04949: Family of unknown
           function (DUF662)
          Length = 173

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = +3

Query: 105 ANKAKQAEIDRKRAEVRKRME 167
           A KAK+ EI++K+ E+R+R++
Sbjct: 46  AFKAKEEEIEKKKMEIRERVQ 66


>At1g11240.1 68414.m01287 expressed protein
          Length = 200

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 84  EKKRLEEANKAKQAEIDRKRAEVRK--RMEE 170
           +KKR +EA K ++    RKR E RK  ++EE
Sbjct: 52  KKKRRKEAQKQQEEAFRRKRIEARKNRKLEE 82


>At5g61320.1 68418.m07695 cytochrome P450, putative Similar to
           Cytochrome P450 89A2 (SP:Q42602)[Arabidopsis thaliana];
           contains Pfam profile: PF00067 cytochrome P450
          Length = 497

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +1

Query: 73  WRLMKKSVSRRXIRPNRPKSTASALR 150
           WRL++++++   + P+R KS ++A R
Sbjct: 127 WRLLRRNLTSEILHPSRVKSYSNARR 152


>At1g26790.1 68414.m03261 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2b
           GI:3386548 from [Arabidopsis thaliana]
          Length = 396

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -1

Query: 123 PVWPYX-PPRDAFFHQP 76
           P WPY  PP  +F+H P
Sbjct: 262 PPWPYQYPPNPSFYHMP 278


>At5g04890.1 68418.m00513 small heat shock-like protein (RTM2)
           similar to 17.9 kDa heat-shock protein [Helianthus
           annuus] GI:11990130; contains Pfam profile PF00011:
           Hsp20/alpha crystallin family; supporting cDNA
           gi|7407072|gb|AF208051.1|AF208051; identical to cDNA
           small heat shock-like protein (RTM2) GI:7407072, small
           heat shock-like protein [Arabidopsis thaliana]
           GI:7407073
          Length = 366

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 84  EKKRLEEANKAKQAEIDRKRAEVRKRMEEA 173
           ++K  EEA + K+  ++ K A +RK  EEA
Sbjct: 141 KEKEEEEAKQMKKQLLEEKEALIRKLQEEA 170


>At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to cytosolic factor
           (Phosphatidylinositol/phosphatidylcholine transfer
           protein) (PI/PCTP) (SP:P24280) [Saccharomyces
           cerevisiae]; ESTs gb|T76582, gb|N06574 and gb|Z25700
           come from this gene
          Length = 540

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 87  KKRLEEANKAKQAEIDRKRAEVRKRMEEAS 176
           KK+     K K+ E+ +  AEV K+ EEA+
Sbjct: 92  KKKESSPMKEKKEEVVKPEAEVEKKKEEAA 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,992,128
Number of Sequences: 28952
Number of extensions: 75183
Number of successful extensions: 344
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)