Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30336
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.5  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   10.0 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   10.0 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   10.0 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   10.0 

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 205 SNTRSQPLLVL*GKRGQMLNSM 270
           + T S+P+LVL G R ++L S+
Sbjct: 273 AQTGSEPMLVLSGPRTRLLGSV 294


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 205 SNTRSQPLLVL*GKRGQMLNSM 270
           + T S+P+LVL G R ++L S+
Sbjct: 273 AQTGSEPMLVLSGPRTRLLGSV 294


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 169 ICCLGTPLPGPSTSARVWSITSTTLTNF 86
           I CL  P PG S ++    +    L+N+
Sbjct: 5   ISCLVAPFPGASANSEAKRLYDDLLSNY 32


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -3

Query: 457 GIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVICARFSLFANF 299
           GI  L K P+R++     L       ++L   +V++      +  RFS F  F
Sbjct: 543 GITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRF 595


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 173 LKPTPSHKIPPQI 211
           +K  P HK+PP I
Sbjct: 62  VKYLPGHKLPPNI 74



 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 244 KRGQMLNSMKNGQKVNGP 297
           K  ++   M NGQK+ GP
Sbjct: 284 KISELEKEMLNGQKLQGP 301


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 330  MTDYDRFKLTAARVKRNRARTA 395
            +T++ RF+  AA  +  R RTA
Sbjct: 1137 LTEWSRFEFRAALHEALRGRTA 1158


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 428 CWYLRQEKYP*SGCEKSAHQEGDQKT 505
           C Y R +K    G ++ A QE  Q+T
Sbjct: 162 CQYCRYQKCLAMGMKREAVQEERQRT 187


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 428 CWYLRQEKYP*SGCEKSAHQEGDQKT 505
           C Y R +K    G ++ A QE  Q+T
Sbjct: 162 CQYCRYQKCLAMGMKREAVQEERQRT 187


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 506 WFFGRLLGAHFFRSRFRDIFLAEGTSTRSLHL 411
           WF  R   A FFR   +    A GT++ +  L
Sbjct: 336 WFLTRQNPAAFFRGMMQAWMTALGTASSAATL 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,560
Number of Sequences: 438
Number of extensions: 3117
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)