Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30333
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)                   29   2.3  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_13261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)                   27   9.2  

>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
          Length = 304

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 70  IKTKNVDAVFVEKQKKILSFFQDVSQLNTDD-EYYKIGKD---YDIEM 201
           I  + ++A  +EK K++L FF  +   N +D EY  I  +   Y +EM
Sbjct: 227 ILKEEIEAFSIEKMKEVLLFFDPIDVSNMEDFEYSHINAEDIMYSLEM 274


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
 Frame = +3

Query: 6    CLDSGWACSRRAQQC-STKAEHH-------KDKKCGCRIC*KAKENSVLLPRCEP 146
            C+D G+ CS    +C ST  +H+        D  C C      ++   L  RC P
Sbjct: 877  CVDKGFNCSEDINECLSTPCQHNATCNDLVNDFSCNCTANYTGRQCEYLKTRCRP 931


>SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 208 PYSFRYHSLCQF-YNIHHQCLVGSHLGRRTEFSFAFQQIRHP 86
           P+S+R    C+F   +H+ CL  +H  +  EF +   +   P
Sbjct: 68  PFSYRNKVFCRFDAAVHYDCLYVTHKKKHVEFRWLHIEFLQP 109


>SB_13261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 193 IEMNMDNYTNKKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIALF 333
           +E N+ + ++   +    +M RTG    +   S FY K+ +E I ++
Sbjct: 27  LEENITDMSDFSVISNTEEMIRTGHNHSSSNSSEFYTKLSEETITIY 73


>SB_13238| Best HMM Match : rve (HMM E-Value=1.1e-13)
          Length = 637

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 181 CQFYNIHHQCL-VGSHLGRRTEFSFAFQQIRHPHFLSLWCSALV-LHC*ARRLQAQPESR 8
           C F  I  +CL +   L R  +++F  + I H     L   A   LH   +RLQ  P+SR
Sbjct: 335 CGFAQIEKECLAIVFSLERFHQYTFGRKTIVHSDHKPLEMIARKPLHKSPKRLQGWPDSR 394

Query: 7   Q 5
           Q
Sbjct: 395 Q 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,480,766
Number of Sequences: 59808
Number of extensions: 298450
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)