Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30333
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24440.1 68416.m03067 fibronectin type III domain-containing ... 33 0.11
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 33 0.11
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 33 0.11
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 31 0.46
At3g10150.1 68416.m01217 calcineurin-like phosphoesterase family... 29 1.4
At5g27230.1 68418.m03248 expressed protein ; expression support... 29 1.9
At5g40200.1 68418.m04878 DegP protease, putative contains simila... 28 3.2
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly... 28 4.3
At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase ... 27 5.7
At3g20260.1 68416.m02566 expressed protein 27 7.5
At4g23930.2 68417.m03442 expressed protein hin1 protein homolog,... 27 9.9
At4g22320.1 68417.m03227 expressed protein 27 9.9
At3g20610.1 68416.m02608 non-race specific disease resistance pr... 27 9.9
>At3g24440.1 68416.m03067 fibronectin type III domain-containing
protein contains Pfam profile PF00041: Fibronectin type
III domain
Length = 602
Score = 33.1 bits (72), Expect = 0.11
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +3
Query: 6 CLDSGWACSRRAQQCSTKAEHHKDKKCGCRIC*KAKENS--VLLPRCEPTK 152
CL S W C + + + E K+C C +C EN L CEP K
Sbjct: 42 CLRSSWICKNASCRANVPKEDSFCKRCSCCVCHNFDENKDPSLWLVCEPEK 92
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -1
Query: 507 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 349
K R + R + + AL N+DVE +E+ L+E T G ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -1
Query: 507 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 349
K R + R + + AL N+DVE +E+ L+E T G ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 31.1 bits (67), Expect = 0.46
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 226 KAVEEFLKMYRTGFMPKNLEFSVFYD 303
KA+E F +MY+TG MP + +S D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264
>At3g10150.1 68416.m01217 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 367
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 147 LAHILEEGQNFLLLF--NKYGIHIFCLYGARLWYCTAEHDGY 28
+ +LE + +F + +G+ C Y +LW C A H GY
Sbjct: 284 MMRVLENRSSVKAVFVGHNHGLDWCCPYKDKLWLCFARHTGY 325
>At5g27230.1 68418.m03248 expressed protein ; expression supported
by MPSS
Length = 948
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 85 VDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLK 249
V A+ +EK++K L D S E+ K KD+D+E + K+ VE+ K
Sbjct: 69 VKALELEKKEKELCLI-DESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122
>At5g40200.1 68418.m04878 DegP protease, putative contains
similarity to DegP2 protease GI:13172275 from
[Arabidopsis thaliana]
Length = 592
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 151 NTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFL 246
N +DEY K DYD + +D T K+A + L
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDIL 573
>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
identical to GI:9957293; contains Pfam profile: PF01397
terpene synthase family
Length = 591
Score = 27.9 bits (59), Expect = 4.3
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 103 EKQKKILSFFQD--VSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPK 276
EK +K+L+ Q + QL D+ K+G Y E +DN ++ + +
Sbjct: 82 EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141
Query: 277 NLEFSVF 297
LEF +F
Sbjct: 142 ALEFRLF 148
>At2g39290.1 68415.m04824 phosphatidylglycerolphosphate synthase
(PGS1) identical to phosphatidylglycerolphosphate
synthase GI:13365519 from [Arabidopsis thaliana]
Length = 296
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 157 QCLVGSHLGRRTEFSFAFQQIRHPHFLSLWCSA 59
+C++ S RT F Q RH H LS + S+
Sbjct: 33 RCIITSRYSSRTSLRFPIQISRHQHRLSYFSSS 65
>At3g20260.1 68416.m02566 expressed protein
Length = 437
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 103 EKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFM 270
EK+ KIL+ + NT+ GK +IE + D++ + ++ R FM
Sbjct: 20 EKEDKILAQQEQARSENTEAGVIDSGKGDEIEDDDDDFITNEVKRRLKELRRNSFM 75
>At4g23930.2 68417.m03442 expressed protein hin1 protein homolog,
Oryza sativa, PIR:T02662
Length = 160
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 244 LKMYRTGFMPKNLEFSVFYDKMRDEAIALFHLFYY 348
L +Y T F P++ E SV K+ ++A LFYY
Sbjct: 26 LTVYLTVFRPRDPEISVTSVKVPSFSVANSSLFYY 60
>At4g22320.1 68417.m03227 expressed protein
Length = 238
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 61 PSTIKTKNVDAVFVEKQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEE 240
P + K V +E+QKK ++ ++ ++ DD KI +D +E D K VEE
Sbjct: 109 PPRRRFKYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164
>At3g20610.1 68416.m02608 non-race specific disease resistance
protein, putative similar to non-race specific disease
resistance protein NDR1 [Arabidopsis thaliana]
gi|2754816|gb|AAB95208
Length = 222
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 169 YKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLEF 288
YK+ ++E+N D T K E+ +KM + P+ L F
Sbjct: 162 YKLKASVNLEVNEDGATKVKDKEDGIKMKISDSSPQRLTF 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,665,807
Number of Sequences: 28952
Number of extensions: 201954
Number of successful extensions: 525
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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