Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30330
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   2.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   5.1  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.1  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   6.7  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   8.9  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   8.9  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   8.9  

>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -2

Query: 278 TLPVGNRVTSVVVGKNQTPLDVEKMYNMITTSFLSDGGDGFTMIKDHKKNEVVVGRDQQV 99
           TL + +R  ++V   N   + +EK+     TS L      +  + +H K  V+V  D+  
Sbjct: 534 TLRLIDRKKNIVKSLNGEYIALEKIEAQFFTSPLVSNVCAYADV-NHAKPVVIVNPDENG 592

Query: 98  FRAYVEKHS 72
            R Y+ K+S
Sbjct: 593 LRTYLTKNS 601


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = -2

Query: 284  NITLPVGNRVTSVVVGKNQTPLDVEKMYNMITTSFLSDGGDGFTMIKDHKKNEVVVGRDQ 105
            N+   + N  TS+  G  + PLDV    N  +   L +     T + + +K+E       
Sbjct: 1146 NVVDSINNLRTSIANGDIKEPLDVVTDDNTNSNFSLEETNASVTDMPESEKHE------N 1199

Query: 104  QVFRAYVEKHSP 69
             +F+AY+ K  P
Sbjct: 1200 GIFQAYLLKEMP 1211


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 120 DHFILLMVFDHRESISAIRQE*RSNHIIHLLNIQRCLVFSD 242
           DH +  +  D+      +  E  ++H+ HLLNI +C +  D
Sbjct: 152 DHIVSNLANDNTLLNRQVSTEEWNSHLRHLLNIPKCFLGVD 192


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 516 GVLVAYAAWQYKGFDNGRRYNPR 448
           GVL+ Y  W    F+N + + PR
Sbjct: 244 GVLIFYMTWGITDFNNHQDFEPR 266


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 305 SGLRVTYNITLPVGNRVTSVVVGKNQTPLDVEKMYNMITTS 183
           S L  T+N++  VG   +S +     +PL+V  +YN  + S
Sbjct: 21  SALDDTFNVSRSVGLISSSNLESCQSSPLEVGNIYNSTSAS 61


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 412 ILSLKGNNSKTAPWVISPSI 471
           +L L+GN S+T  W + P +
Sbjct: 185 VLRLRGNISRTTAWEVMPDL 204


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 263 NRVTSVVVGKNQTPLDVEKMYNMITTSFLSDGGDG 159
           N++ S     N+   D+ K+Y+ +TTS  S   DG
Sbjct: 44  NKLESGTNDNNKNKEDLSKLYSDVTTSNTSHEKDG 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,899
Number of Sequences: 5004
Number of extensions: 46524
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)