Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30330
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0006 + 16257288-16259522 29 1.7
06_02_0263 - 13566621-13569875 28 5.1
06_01_0156 + 1171717-1174140 27 6.8
04_04_0250 - 23914503-23914555,23915428-23915540,23915689-239157... 27 6.8
10_08_0188 - 15596062-15597084,15597513-15597791 27 8.9
07_03_0623 - 20033815-20034009,20034308-20034415,20034416-200344... 27 8.9
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959 27 8.9
03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348... 27 8.9
01_06_0194 - 27368563-27370956 27 8.9
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.5 bits (63), Expect = 1.7
Identities = 31/95 (32%), Positives = 39/95 (41%)
Frame = -2
Query: 332 FKGPWLLQVSGLRVTYNITLPVGNRVTSVVVGKNQTPLDVEKMYNMITTSFLSDGGDGFT 153
FK WL GLRV Y P N V S +N T LD +Y + SF +D
Sbjct: 419 FKAVWLADSHGLRVVYEKKGP--NSVFSTAWNQN-TALDT--LYVCVGPSFSADKPLQIY 473
Query: 152 MIKDHKKNEVVVGRDQQVFRAYVEKHSPLSVEPDG 48
I D + GR Q+ A ++ S PDG
Sbjct: 474 AIHD---VSALGGRQQRRLTAGASNNAFPSSSPDG 505
>06_02_0263 - 13566621-13569875
Length = 1084
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Frame = -2
Query: 359 VSEAWGYKPFKGPW----LLQVSGLRVTYNITLPVGNRVTSVVVGKNQTPLDVEKMYNMI 192
V +AW K F GPW +Q++ LR ++ + + + D+ K+ I
Sbjct: 914 VYQAWKAKQFSGPWCYENFVQLTSLRRAQDVRKQLLEIMDKYKLNVVSAGNDLTKVRKAI 973
Query: 191 TTSFL-----SDGGDGFTMIKDHKK 132
T F D G+ I DH++
Sbjct: 974 TAGFFFHAARKDPQGGYRTIADHQQ 998
>06_01_0156 + 1171717-1174140
Length = 807
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -2
Query: 284 NITLPVGNRVTSVVVGKNQTPLDVEKMYNMITTSFLSDGGDGFTMIKDH 138
++TLP + ++ P V++ L DGGDG + + +H
Sbjct: 531 SLTLPAAVSLALAILPAVSVPCQVKQSIAEYMAKSLYDGGDGMSAVAEH 579
>04_04_0250 -
23914503-23914555,23915428-23915540,23915689-23915723,
23915768-23915852,23917015-23917235
Length = 168
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 425 FNDKMKTFELQGKYILEA-LERGVSEAWGYKPFKGPWLLQVS 303
FN MK L+ ++I A L++G + + Y+P WLL ++
Sbjct: 78 FNKSMKLNFLREEFIWSAALKKGHMDMFAYRPRSAVWLLPLN 119
>10_08_0188 - 15596062-15597084,15597513-15597791
Length = 433
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +1
Query: 55 GSTLSGECFST*ARKTCWSRPTTTSFFLWSLI-IVNPSPPSDRNDVVIILYIFSTSNGVW 231
GS SG + A P S W LI +N S P + DVV ++ S W
Sbjct: 53 GSHESGAGATCFAAAAASGEPCELSRSPWDLIGELNISDPQEE-DVVEKYFVHVASRASW 111
Query: 232 FFPTTTEVTLLPTG 273
FPT+ + G
Sbjct: 112 LFPTSMPAAVKQKG 125
>07_03_0623 - 20033815-20034009,20034308-20034415,20034416-20034478,
20035361-20036221,20036881-20037461,20037551-20037623,
20037756-20037947,20038728-20039513
Length = 952
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = -2
Query: 305 SGLRVTYNITLPVGNRVTSVVVGKNQTPLDVEKMYNMITTSFLSDGGDGFTMIKDHKKNE 126
+G+ V N + N+ +V+V P D++ N + T + D G G+ I KN+
Sbjct: 855 TGMLVKLNSCFNIENQCNTVMVQLMLCP-DIQ---NKLLTDLVMDNGSGYLGIPLDAKND 910
Query: 125 VVVG 114
+++G
Sbjct: 911 LLLG 914
>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
Length = 849
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 254 TSVVVGKNQTPLDVEKMYNMITTSFLSDGGDGFTMIKDHKKNEVVVGRDQQV 99
T+V V + P+ V ++ +++L GDG I DH N ++ D V
Sbjct: 116 TTVWVANRERPITVPRL----NSTWLKMSGDGNLYILDHATNSIIWSTDHVV 163
>03_02_0896 -
12233706-12233801,12234005-12234181,12234741-12234854,
12234928-12235006,12235372-12235533,12235957-12236079,
12236139-12236218
Length = 276
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = -1
Query: 384 HIRGSGERRQRGLGIQALQRSMALASLRSPCH----IQYYVTSR*QGD 253
+++G ++ + G + +L + + + L +PCH I YYVTS+ + D
Sbjct: 93 NVKGCTDQVENGTKL-SLGKDIEILCLHTPCHTKGHISYYVTSKEEED 139
>01_06_0194 - 27368563-27370956
Length = 797
Score = 27.1 bits (57), Expect = 8.9
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Frame = +1
Query: 205 IFSTSNG--VWFFPTT----TEVTLLPTGNVILYVTRRPETCKS-HGPLKGLYPQASLTP 363
+ + +NG VW T+ T VTLL TGN+++ + +S P L P +LT
Sbjct: 109 VLTDTNGTTVWESKTSSGKHTTVTLLDTGNLVIKDSSNSTVWQSFDSPTDTLLPWQNLTK 168
Query: 364 ----LSRASNMYFPCNSKVFILSLKGNNSKTAPW 453
+SR ++YF N V L G + W
Sbjct: 169 NIRLVSRYHHLYFD-NDNVLRLLYDGPEITSIYW 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,736,910
Number of Sequences: 37544
Number of extensions: 314832
Number of successful extensions: 676
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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