Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30330
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4648| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   3e-06
SB_13076| Best HMM Match : NUC202 (HMM E-Value=3)                      29   2.3  
SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)                29   2.3  
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    29   3.0  
SB_2831| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_35665| Best HMM Match : PAN (HMM E-Value=0.017)                     28   5.3  
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13)             28   5.3  
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  27   6.9  
SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   9.2  
SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_4648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
 Frame = -2

Query: 509 LSLMQRGNIRASIM---EGDITQGAVFELLPFNDKMKTFELQGKYILEALERGVSEAWGY 339
           + L   GNI  SI    EG +T G +F+ +P+++      ++G  +   LE+ V   W  
Sbjct: 399 VGLQTAGNIFKSIELTPEGYVTYGELFDAMPYSNTFDVLNMKGSDLRGVLEQSV-RTWPS 457

Query: 338 KPFKGPWLLQVSGLRVTYNITLPVGNRVTSVVVGKNQT------PLDVEKMYNMITTSFL 177
             F     LQVSGL+V+Y+++     RV  V V   Q        L+   +Y +IT S++
Sbjct: 458 YTF-----LQVSGLKVSYDMSREPMTRVIKVKVRCAQCLVPVYHDLNDTGIYKVITNSWI 512

Query: 176 SDGGD 162
           + GGD
Sbjct: 513 AGGGD 517


>SB_13076| Best HMM Match : NUC202 (HMM E-Value=3)
          Length = 472

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 295 RRPETCKSHGPLKGLYPQASLTPLSRASNMYFPCNSKVFILSLKGNNSKTAP 450
           +RPETC S   L   Y + +L   S  S+ ++P   K    S+   ++ T+P
Sbjct: 352 QRPETCPSDNELAKRYNRNALEYESELSSHHYPTLHKAGEASVGSESNTTSP 403


>SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)
          Length = 912

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 338 KPFKGPWLLQVSGLRVTYNITLPVGNRVTSVVVGKNQ 228
           KP   PW L VS   VT  +TL + +R T+ ++   +
Sbjct: 876 KPLGTPWWLNVSTHSVTEAVTLEMDSRPTAFIINTKE 912


>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 385 YFPCNSKVFILSLKGNNSKTAPWVISPSIIEALILPRCISDKN 513
           YF C+ K F  S + N + T  W   PS +   +    + D+N
Sbjct: 89  YFICSIKEFRTSRRENMTVTVRWYYRPSEVPESVYQLLVQDRN 131


>SB_2831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 235 FPTTTEVTLLPTGNVILY--VTRRPETCKSHGPLKGLYPQASLTPLSRASNMYFPCNS 402
           F T  E   LP   +  Y  +  RPE  + H  +  L P   + P   AS +Y+PC+S
Sbjct: 12  FFTHFENKKLPVLQITKYDVIEERPEVFQKHTSIHTLAP---VGPRRDASTVYYPCSS 66


>SB_35665| Best HMM Match : PAN (HMM E-Value=0.017)
          Length = 218

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 218 PTVSGFFRRQLRSPCYL 268
           P    FFRRQ RSPC+L
Sbjct: 174 PKAISFFRRQDRSPCFL 190


>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 257  VTSVVVGKNQTPLDVEKMYNMITTSFLSDG 168
            V  +++GKN+T +DV+K +N++       G
Sbjct: 2709 VFHMMIGKNKTSVDVDKGFNVLVEGICGSG 2738


>SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13)
          Length = 340

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 257 VTSVVVGKNQTPLDVEKMYNMITTSFLSDG 168
           V  +++GKN+T +DV+K +N++       G
Sbjct: 10  VFHMMIGKNKTSVDVDKGFNVLVEGICGSG 39


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 146  KDHKKNEVVVGRDQQVFRAYVEKHS 72
            K H+K+ ++ G +  V+RAY E  S
Sbjct: 1534 KQHRKDRLIAGHNSPVYRAYQENLS 1558


>SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -2

Query: 308 VSGLRVTYNITLPVGNRVTSVVVGKNQTPLDVEKMYNMITTSFLSDGGD-GFTMIKDHKK 132
           VS + ++Y+  +    +++ V + KN T +   K  N  + +F +D     +  +  +  
Sbjct: 124 VSHVGISYHSLVYAYRKLSIVRLTKNTTII-YRKFKNFNSDAFRADIASLNWNFLISYND 182

Query: 131 NEVVVGRDQQVFRAYVEKHSPL 66
             V+    +++F  +VEKH+PL
Sbjct: 183 PNVMWNNRKEMFLHFVEKHAPL 204


>SB_35913| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1176

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
 Frame = +1

Query: 187 VVIILYIFSTSNGVWFFPTTTEVTLLPTGNVILYVTRRPETCKSHGPLKGLYPQAS--LT 360
           VVII+ I  TS   +   TT  + +  T  V+L ++       +H PL       +  ++
Sbjct: 699 VVIIIIIIITS---FVISTTVIIMIAITITVVLIISY------NHKPLSSSSSTFAKRVS 749

Query: 361 PLSRASNMYFPCNSKVFILSL--KGNNS--KTAPWVISPSIIEALIL 489
           PL   S + FPCNS   ++SL  KG  S  +  P  +   I EA+++
Sbjct: 750 PLV-FSPVLFPCNSSRLVVSLPTKGTGSGLELNPAYLEQRIQEAIVI 795


>SB_31204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 232 FFPTTTEVTLLPT-GNVILYVTRRPETCKSHGPLKG 336
           +FP    +T +   G++I    RRP  CK  GP++G
Sbjct: 653 YFPAQMLLTEIGARGDLIPSAQRRPFVCKGPGPVRG 688


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,043,903
Number of Sequences: 59808
Number of extensions: 360173
Number of successful extensions: 781
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)