Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30330
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64857-4|AAN84850.1| 356|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z81562-2|CAB04559.1| 331|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z92789-6|CAB07218.2| 303|Caenorhabditis elegans Hypothetical pr... 28 4.6
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z82272-5|CAB05220.1| 341|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF040650-4|AAB95009.2| 291|Caenorhabditis elegans Hypothetical ... 27 6.0
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ... 27 6.0
Z68336-7|CAL69738.1| 236|Caenorhabditis elegans Hypothetical pr... 27 8.0
U46668-5|AAA93349.2| 569|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF386744-1|AAL57289.1| 384|Caenorhabditis elegans PAF-1 protein. 27 8.0
AF039716-8|AAB96738.1| 384|Caenorhabditis elegans Paf-acetylhyd... 27 8.0
>U64857-4|AAN84850.1| 356|Caenorhabditis elegans Hypothetical
protein C37C3.7 protein.
Length = 356
Score = 31.1 bits (67), Expect = 0.49
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 286 YVTRRPETCKSHGPLKGLYPQASLTP 363
Y RR E CK HGPL +P L P
Sbjct: 199 YTGRRCEQCKKHGPLIEPFPHCELDP 224
>Z81562-2|CAB04559.1| 331|Caenorhabditis elegans Hypothetical
protein K03D7.4 protein.
Length = 331
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 347 WGYKPFKGPWLLQVSGLRVTYNITLPVGNRVTSVVVGKNQTPL 219
+ YKP+K + L ++ +T PV NR+ ++++ T L
Sbjct: 288 FAYKPYKKAVISIFRELLPSWCLTQPVANRIGTIIISNQNTSL 330
>Z92789-6|CAB07218.2| 303|Caenorhabditis elegans Hypothetical
protein H02I12.4 protein.
Length = 303
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 251 SVVVGKNQTPLDVEKMYNMITTSFLSDGGDGFTM 150
+VV + P+D K YN+I S +DG TM
Sbjct: 59 NVVFNVTRIPVDFNKTYNLIIKSEANDGKSKMTM 92
>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical
protein C18H2.5 protein.
Length = 1139
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 239 GKNQTPLDVEKMYNMITTSFLSDGGDGFTMIKDHKKNEVVVGRDQQVFRA 90
G L +++Y I + +G D + +KK E ++G D V RA
Sbjct: 833 GNTALHLATKRLYPDIVEILIKNGADRTLLNVQNKKPEEIIGTDLDVLRA 882
>Z82272-5|CAB05220.1| 341|Caenorhabditis elegans Hypothetical
protein F55G11.8 protein.
Length = 341
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 299 LRVTYNITLPVGNRVTSVVVGKNQTPLDVEKMYNMITTSFLSDGG-DGFTMIKDHKKNEV 123
L TYN+T+ G R++S+V + T V+ +T + DG FT K + K ++
Sbjct: 254 LNSTYNVTVNGGTRMSSLVAVSDITMHMVDVQMKDESTVTVYDGSPSAFTFDKTYTKTQL 313
>AF040650-4|AAB95009.2| 291|Caenorhabditis elegans Hypothetical
protein T04B8.3 protein.
Length = 291
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = -2
Query: 191 TTSFLSDGGDGFTMIKDHKKNEVVVGRDQQVFRAYVEKHSPLSVEPDGRIV 39
T SFL+ G + + KD K NE+ VGR +Q F+ + K P + + DG+I+
Sbjct: 51 TVSFLNKYGIAW-ICKDGK-NELPVGRLEQKFQFELGKDCPPTYK-DGKII 98
>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
protein C07H6.3 protein.
Length = 1378
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/44 (45%), Positives = 24/44 (54%)
Frame = +1
Query: 43 IRPSGSTLSGECFST*ARKTCWSRPTTTSFFLWSLIIVNPSPPS 174
I PS ST S F++ AR + RPTTT+ SL PSP S
Sbjct: 266 IHPSASTTS---FTSSARLSTPPRPTTTAAQSLSLAPQTPSPLS 306
>Z68336-7|CAL69738.1| 236|Caenorhabditis elegans Hypothetical
protein F22B3.10 protein.
Length = 236
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 202 YIFSTSNGVWFFPTTTEVTLLPTGN 276
Y+F T N VW FPTT T+ G+
Sbjct: 96 YLFVTDNTVW-FPTTVNYTISLAGS 119
>U46668-5|AAA93349.2| 569|Caenorhabditis elegans Hypothetical
protein F38E9.1 protein.
Length = 569
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 28 YSLITIRPSGSTLSGECFST*ARKTCWSRPTTTSFFL 138
+ +I + PS + G CF + A + W R TS L
Sbjct: 197 FRIIVVGPSDQDMDGCCFRSAALQNKWPRKNNTSDLL 233
>AF386744-1|AAL57289.1| 384|Caenorhabditis elegans PAF-1 protein.
Length = 384
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 194 ITTSFLSDGGDGFTMIKDHK 135
+T SFL DG DG +KD K
Sbjct: 348 LTLSFLKDGKDGVQKLKDEK 367
>AF039716-8|AAB96738.1| 384|Caenorhabditis elegans
Paf-acetylhydrolase protein 1 protein.
Length = 384
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 194 ITTSFLSDGGDGFTMIKDHK 135
+T SFL DG DG +KD K
Sbjct: 348 LTLSFLKDGKDGVQKLKDEK 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,315,905
Number of Sequences: 27780
Number of extensions: 262097
Number of successful extensions: 656
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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