Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30330
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.61 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   2.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   2.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 12/56 (21%), Positives = 24/56 (42%)
 Frame = +1

Query: 247 TEVTLLPTGNVILYVTRRPETCKSHGPLKGLYPQASLTPLSRASNMYFPCNSKVFI 414
           T+V L+  GN   +  R  +  ++H       P+  +TP  +A  +    N +  +
Sbjct: 370 TKVQLIHAGNYTCHAVRNQDVVQTHVLTIHTIPEVKVTPRFQAKRLKEEANIRCHV 425


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 346 GDTSPSKVHGSCKSQVSVS 290
           GD S +K  G C SQV  S
Sbjct: 62  GDISVTKCEGFCNSQVQPS 80


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 346 GDTSPSKVHGSCKSQVSVS 290
           GD S +K  G C SQV  S
Sbjct: 62  GDISVTKCEGFCNSQVQPS 80


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -3

Query: 382 Y*RLWREASARLGDTSPSKVHGSCKSQVSVSHT 284
           Y R+WR  +    +  P        + V VSHT
Sbjct: 84  YNRVWRPDTILYNNADPQYSSAVINTNVIVSHT 116


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -2

Query: 332 FKGPWLLQVSGLRVTYNITLPVGNRVTSVVVGKNQTPLDVEKMY 201
           + GPW+L    +    N+ + +GN +  + V       +V  M+
Sbjct: 60  WSGPWILVTLIVLAIVNVMVVLGNVLVILAVYHTSKLRNVTNMF 103


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 262 LPTGNVILYVTRRPETCKSHG 324
           +P  + +  VT+RP+T KS G
Sbjct: 28  MPMPDDMRTVTKRPKTKKSQG 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,692
Number of Sequences: 438
Number of extensions: 3669
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)