Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30330
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09280.1 68418.m01075 pectate lyase family protein similar to... 31 0.61
At2g04270.2 68415.m00417 glycoside hydrolase starch-binding doma... 30 1.1
At2g04270.1 68415.m00416 glycoside hydrolase starch-binding doma... 30 1.1
At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) iden... 29 1.4
At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:71... 29 1.4
At1g52330.1 68414.m05907 expressed protein ; expression supporte... 29 2.5
At5g62230.1 68418.m07814 leucine-rich repeat family protein / pr... 28 3.2
At3g07460.2 68416.m00889 expressed protein contains Pfam profile... 28 3.2
At1g06990.1 68414.m00744 GDSL-motif lipase/hydrolase family prot... 27 7.5
At4g01090.1 68417.m00147 extra-large G-protein-related contains ... 27 9.9
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ... 27 9.9
>At5g09280.1 68418.m01075 pectate lyase family protein similar to
major pollen allergen Cup a 1 SP:Q9SCG9 from [Cupressus
arizonica]
Length = 297
Score = 30.7 bits (66), Expect = 0.61
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -3
Query: 193 LLRHSCLMAEMDSR*SKTIRRMKWSWAVTSRFSEPTSRSTHHSALNLT 50
L +H + A++ S+T+ R+K+S R++ P + S + LN+T
Sbjct: 249 LEKHGPITAQIKGSQSQTLNRLKYSLLQPERYTAPETPSVSTTTLNMT 296
>At2g04270.2 68415.m00417 glycoside hydrolase starch-binding
domain-containing protein contains Pfam profile: PF00686
starch binding domain
Length = 871
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = -2
Query: 341 YKPFKGPWLLQVSGLRVTYNITLPVGNRVTSVVVGKNQTPLDVEKMYNMITTSFLSDGG 165
Y+P + PWL+Q S + + + + + N+ L+ ++ + +T + L DGG
Sbjct: 138 YQPIEEPWLIQES-ITLQHERNMQTDSEQDVESCDDNENNLNTDEQNHQLTETLLPDGG 195
>At2g04270.1 68415.m00416 glycoside hydrolase starch-binding
domain-containing protein contains Pfam profile: PF00686
starch binding domain
Length = 996
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = -2
Query: 341 YKPFKGPWLLQVSGLRVTYNITLPVGNRVTSVVVGKNQTPLDVEKMYNMITTSFLSDGG 165
Y+P + PWL+Q S + + + + + N+ L+ ++ + +T + L DGG
Sbjct: 263 YQPIEEPWLIQES-ITLQHERNMQTDSEQDVESCDDNENNLNTDEQNHQLTETLLPDGG 320
>At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) identical
to peroxisomal ABC transporter PXA1 GI:15320529 from
[Arabidopsis thaliana]; contains Pfam profile PF00005:
ABC transporter;
Length = 1337
Score = 29.5 bits (63), Expect = 1.4
Identities = 24/101 (23%), Positives = 46/101 (45%)
Frame = +1
Query: 142 SLIIVNPSPPSDRNDVVIILYIFSTSNGVWFFPTTTEVTLLPTGNVILYVTRRPETCKSH 321
SL++ P+ + ++ I+ T G P+ ++ L +GN + +V +RP TC
Sbjct: 1125 SLLVTGPNGSGKTSVFRVLRDIWPTVCGRLTKPSL-DIKELGSGNGMFFVPQRPYTCLGT 1183
Query: 322 GPLKGLYPQASLTPLSRASNMYFPCNSKVFILSLKGNNSKT 444
+ +YP + RA+ +Y S S+ ++ KT
Sbjct: 1184 LRDQIIYPLSKEEAEKRAAKLYTSGESSTEAGSILDSHLKT 1224
>At1g58250.1 68414.m06624 SABRE, putative similar to SABRE
(GI:719291) [Arabidopsis thaliana]
Length = 2603
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -2
Query: 158 FTMIKDHKKNEVVVGRDQQVFRAYVEKHSPLS 63
F + KD ++ +GR + +++ Y+E+H+P S
Sbjct: 691 FCLNKDKLSTQMELGRAKSIYQEYLEEHTPCS 722
>At1g52330.1 68414.m05907 expressed protein ; expression supported
by MPSS
Length = 214
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 145 LIIVNPSPPSDRNDVVIILYIFSTSNGVW-FFPTTTEVTLLPTGNVILYVTRRP 303
LI +PSPPS R ++ I I S ++ F+P+ + ++ ++V RRP
Sbjct: 32 LISSHPSPPSRRRFIISIFLISFASILIYIFWPSDPRIKIIRVKISHVHVHRRP 85
>At5g62230.1 68418.m07814 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 966
Score = 28.3 bits (60), Expect = 3.2
Identities = 22/104 (21%), Positives = 44/104 (42%)
Frame = -2
Query: 506 SLMQRGNIRASIMEGDITQGAVFELLPFNDKMKTFELQGKYILEALERGVSEAWGYKPFK 327
+L Q N++ + G+ G + LL +N+ ++ L+G + L + + G
Sbjct: 162 TLTQIPNLKRLDLAGNHLTGEISRLLYWNEVLQYLGLRGNMLTGTLSSDMCQLTGL---- 217
Query: 326 GPWLLQVSGLRVTYNITLPVGNRVTSVVVGKNQTPLDVEKMYNM 195
W V G +T I +GN + ++ + + E YN+
Sbjct: 218 --WYFDVRGNNLTGTIPESIGNCTSFQILDISYNQITGEIPYNI 259
>At3g07460.2 68416.m00889 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 271
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 337 LYPQASLTPLSRASNMYFPCNSKVFILSLKGNNSKTAPWVI--SPSIIEALILPRCISDK 510
LY + + R S+++ S V I +L+ ++ A + PS++ AL+ P C D+
Sbjct: 182 LYYTRKMEKIDRCSHLFLKILSTVLISNLRHDSWSDASFFPFPHPSVVSALLSPDCEGDR 241
>At1g06990.1 68414.m00744 GDSL-motif lipase/hydrolase family protein
similar to family II lipases EXL3 GI:15054386, EXL1
GI:15054382, EXL2 GI:15054384 from [Arabidopsis
thaliana]; contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase
Length = 360
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/57 (21%), Positives = 28/57 (49%)
Frame = -2
Query: 200 NMITTSFLSDGGDGFTMIKDHKKNEVVVGRDQQVFRAYVEKHSPLSVEPDGRIVINE 30
++IT + G G+ + D + + V + + R+YVE+ S + + +++E
Sbjct: 110 DIITGVCFASAGSGYDNLTDRATSTLSVDKQADMLRSYVERLSQIVGDEKAASIVSE 166
>At4g01090.1 68417.m00147 extra-large G-protein-related contains
weak similarity to extra-large G-protein [Arabidopsis
thaliana] gi|3201682|gb|AAC19353
Length = 714
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 286 YVTRRPETCKSHGPLKGLYPQASLTP 363
Y + PE + GP+ G+YPQA P
Sbjct: 131 YYHQYPEPIQYPGPVHGMYPQAYQDP 156
>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1720
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -2
Query: 272 PVGNRVTSVVVGKNQTPLDVEKMYNMITTSFLSDGGDGFTMIKDHKKNEVVVG 114
PV ++T V K PLD ++ +N + +S + GD ++ ++ +++G
Sbjct: 431 PVDIQLTKSPVNKTMKPLDNKQTFNSLESSRDALKGDALPDYENSEQPSLIIG 483
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,797,557
Number of Sequences: 28952
Number of extensions: 251873
Number of successful extensions: 617
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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