Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30329
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0141 - 25964706-25965473 33 0.10
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 29 1.7
04_04_0486 - 25582072-25582283,25582366-25582420,25582503-255825... 29 2.2
08_01_0628 - 5460030-5462960 29 2.9
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864... 27 6.8
03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526... 27 6.8
01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027 27 6.8
09_02_0384 - 8294914-8297817 27 8.9
08_01_0781 + 7570485-7570796,7570808-7570885,7570963-7571562 27 8.9
08_01_0647 + 5596338-5596423,5597442-5597550,5598450-5598579,559... 27 8.9
07_01_1106 - 10187609-10190041,10190292-10191932 27 8.9
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578... 27 8.9
>05_06_0141 - 25964706-25965473
Length = 255
Score = 33.5 bits (73), Expect = 0.10
Identities = 27/83 (32%), Positives = 38/83 (45%)
Frame = +3
Query: 228 DLHLKPSRQKRNPASATQPCRMDTCFDFSKCGSDPKIFVYPSDGTVSASYRKVLSVIRES 407
+L L PSR + P A CR CF F+ + + D +S S + L+ + ES
Sbjct: 129 ELWLHPSRYRTRPCRAGVACRRRVCF-FAHTAGELRA-GSKEDSPLSLSPKSTLASLWES 186
Query: 408 RYVTRDPNEACLFVPAIDTLDAD 476
V+ P E +V ID DAD
Sbjct: 187 PPVS--PVEGRRWVDGIDECDAD 207
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 214 LQHLMICTLNHLDKNAILLLQH 279
LQH++ C NH++K A LL QH
Sbjct: 292 LQHMLGCLKNHVEKYAALLDQH 313
>04_04_0486 -
25582072-25582283,25582366-25582420,25582503-25582559,
25582674-25582765,25583148-25583280,25583357-25583434,
25583531-25583676,25583702-25583749,25583804-25584011,
25584154-25584220,25584441-25584499
Length = 384
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 430 FGSLVTYLDSLITDNTFLYEALTVPSLGY 344
FGS+ +L + ITD+ +Y +++ PSL Y
Sbjct: 34 FGSIRYHLQASITDSENIYLSISTPSLSY 62
>08_01_0628 - 5460030-5462960
Length = 976
Score = 28.7 bits (61), Expect = 2.9
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = -3
Query: 514 REATSDTCSDDKGSASSVSIAGTNKHASFGSLVTYLDSLITDNTFLYEALTVPSLGYTKI 335
R D C+ + SAS+ IA +FGS LD+ + L L + + K+
Sbjct: 575 RHLALDRCTSSRRSASAAKIAALRSFQAFGS---KLDASLMSCFRLLTVLNLWFIEINKL 631
Query: 334 FGSLPHLEKSKHVSIRQGCVAE 269
++ +L +++ IR + E
Sbjct: 632 PSTVTNLRNLRYLGIRSTFIEE 653
>12_02_1066 +
25785749-25785868,25785953-25786141,25786250-25786414,
25786649-25786999,25787924-25788001,25788137-25788277,
25788415-25788459,25788597-25788763,25788833-25788911,
25788985-25789067,25789219-25789348,25789432-25789564,
25789955-25790103,25790339-25790534,25791086-25791288
Length = 742
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 352 LGYTKIFGSLPHLEKSKHV 296
+GY IFG LP LE K V
Sbjct: 678 IGYASIFGELPKLESKKDV 696
>03_05_0834 -
28051067-28051381,28051675-28052120,28052330-28052671,
28053170-28053310,28053419-28053489,28053575-28053640,
28053874-28054017,28054149-28054207,28054246-28054369,
28054730-28054862,28055138-28055187,28055715-28055824,
28057355-28057436,28057536-28057705,28057812-28058498,
28058645-28058794,28058908-28059039,28059444-28059594,
28060253-28060344,28062478-28062585
Length = 1190
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = -3
Query: 445 NKHASF-GSLVTYLDSLITDNTFLYEALTVPSLGYTKIFGSLPHLEKS-KHVSIRQGCVA 272
+K SF G + + + + ++ ++L + G+ FG++ H E S H G V
Sbjct: 499 SKDRSFAGVIAPFSEKSVQGDSRAKKSLFNSNCGFN--FGAVSHWEGSLDHSCAASGNVL 556
Query: 271 EAGLRFCLDGLRCRSSSVAKDGNSFNFDLQV 179
+R C GL C + +A+D +D+++
Sbjct: 557 VNSIR-CHTGLACLLTGLARDSGDALYDMKL 586
>01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027
Length = 408
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 330 DHFHI*KSRNMYPYDKAVLQKQDCVFV 250
D HI KS N+ YD A+ DCV V
Sbjct: 201 DGIHIHKSTNVAVYDAAIRTGDDCVSV 227
>09_02_0384 - 8294914-8297817
Length = 967
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 127 LVLFFCIATTEILVSSQTLVNRN*MNCHLLQHLMICTLNHL 249
L L FC +L +++ R+ H L L I LNHL
Sbjct: 799 LDLSFCSKLNSVLANAENGERRDASRVHCLSRLRILQLNHL 839
>08_01_0781 + 7570485-7570796,7570808-7570885,7570963-7571562
Length = 329
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 159 NTSFKSDTCKSKLNELPSFATLDDLHLKP-SRQKRNP 266
N +FK + C KL P F TL+ H +P SR+ P
Sbjct: 145 NRAFKFNHCWLKLRNSPKFQTLES-HKRPRSRKSSTP 180
>08_01_0647 +
5596338-5596423,5597442-5597550,5598450-5598579,
5599241-5600016,5600342-5600497,5600627-5600722
Length = 450
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 127 LVLFFCIATTEILVSSQTLVNRN*MNCHLLQHLMICT 237
++L C+ E +SS +L N + ++C++L+ L ICT
Sbjct: 285 MLLTDCLLEVEE-ISSSSLKNLDIIDCYILKDLSICT 320
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +3
Query: 24 VFNSLRLVWGETNFGIYFYGCEMQAKRRYLLLFMSCAFLLYCYYGNTSFKSDTCKSKLNE 203
++N +++ G + I+ C+ + ++ F +CA YCY +S +T + +LN
Sbjct: 596 IYNDQKILEG-FHLRIWINMCDKKRLLEKIIEFTACA---YCYDAPSSILEETVREELNG 651
Query: 204 LPSFATLDDLHLK 242
L+D ++
Sbjct: 652 KRFLLVLNDADIE 664
>04_04_1267 -
32257035-32257337,32257423-32257570,32257656-32257893,
32257994-32258351,32258791-32258969,32259071-32259175,
32259539-32260871
Length = 887
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -3
Query: 409 LDSLITDNT---FLYEALTVPSLGYTKIFGSLPHL 314
L S++TD FL + L +P YTKIFG+L +L
Sbjct: 622 LHSMLTDREILLFLKKYLKIPKF-YTKIFGTLRYL 655
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,294,033
Number of Sequences: 37544
Number of extensions: 260314
Number of successful extensions: 725
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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