Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30329
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   2e-18
SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)             45   3e-05
SB_19936| Best HMM Match : fn3 (HMM E-Value=5.8e-20)                   31   0.74 
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_46018| Best HMM Match : I-set (HMM E-Value=0.025)                   27   9.2  

>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 42/94 (44%), Positives = 60/94 (63%), Gaps = 2/94 (2%)
 Frame = +3

Query: 240 KPSRQKRNPASATQPCRMDTCFDFSKCGSDPKIFVYP--SDGTVSASYRKVLSVIRESRY 413
           K S   +N       C M+TCFD +KC SD +I+VYP      +S +Y  ++ VI+ESRY
Sbjct: 71  KDSISSKNVPPQPNKCTMETCFDKTKCLSDFRIYVYPVHPGAKLSTTYTNIIKVIKESRY 130

Query: 414 VTRDPNEACLFVPAIDTLDADPLSSEHVSDVASR 515
            T  P EACLF+ AIDTLD D LS+++V ++ ++
Sbjct: 131 YTEFPEEACLFITAIDTLDRDKLSADYVHNIYNK 164


>SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)
          Length = 497

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
 Frame = +3

Query: 237 LKPSRQKRNPASATQPCRMDTCFDFSKC----GSDPKIFVYPSD------------GTVS 368
           ++ ++  + P +    CRM +CFD  +C     S   ++VYP                +S
Sbjct: 51  IRVTKHMQFPQNTAPKCRMHSCFDIYRCRFNENSLISVYVYPYSTFLNEKGRTLNLKPIS 110

Query: 369 ASYRKVLSVIRESRYVTRDPNEACLFVPAIDTLD 470
             + ++L+ I+ES Y T D ++AC+ +P +D L+
Sbjct: 111 VHFDEMLTAIKESSYYTDDKDKACIIIPPLDILN 144


>SB_19936| Best HMM Match : fn3 (HMM E-Value=5.8e-20)
          Length = 365

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 33  SLRLVWGETNFGIYFYGCEMQAKRRYLLLFMSCA--FLLYCYYGNTSFK 173
           +LR+ W  TN   + YG E+Q K  Y +    C   F+      NT ++
Sbjct: 70  ALRITWSPTNCSGHIYGVEIQTKVGYQMKMTQCTTEFIFSGLRPNTKYR 118


>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 505 TSDTCSDDKGSASSVSIAGTNKHASF 428
           +S+TC+D + + S+ S  GTN  AS+
Sbjct: 241 SSNTCADTRSNTSTSSYTGTNTSASY 266


>SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 378 RKVLSVIRESRYVTRDPNEACLFVPAIDTLDADPLSSEHVS 500
           RK+  VI+   ++ R P+ +CL   + D  D D L+SE V+
Sbjct: 160 RKLAKVIKT--FLRRQPSPSCLVAHSGDRFDFDILASEFVN 198


>SB_46018| Best HMM Match : I-set (HMM E-Value=0.025)
          Length = 1122

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 73  ISTVVKCKRNDDTYYFSCLVLFFCIATTEILVSSQTLVNRN*MNCHLLQHLMI 231
           +ST     + ++  Y+ CL++F  + TT +LV+  T    N  N   L+ L I
Sbjct: 358 VSTTAGAYQEENARYYPCLIMFQIVLTT-LLVACCTSFVLNAYNFLFLKKLAI 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,316,989
Number of Sequences: 59808
Number of extensions: 333462
Number of successful extensions: 1000
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)