Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30329
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical pr...    77   1e-14
U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exosto...    77   1e-14
AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfa...    77   1e-14
AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical ...    29   2.0  
Z81142-3|CAB03505.1|  491|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z73425-6|CAB61014.1|  382|Caenorhabditis elegans Hypothetical
           protein F12F6.3 protein.
          Length = 382

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
 Frame = +3

Query: 258 RNPASATQPCRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTR 422
           +NP    + C M  CFDFSKC +  K++++P      +   S  Y K+L    ES + T 
Sbjct: 21  QNPTIERKQCTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTN 80

Query: 423 DPNEACLFVPAIDTLDADPLSSEHVSDV 506
           DPNEAC+F+  IDT D D  S  +V +V
Sbjct: 81  DPNEACIFLLGIDTTDRDVRSQNYVKNV 108


>U94834-1|AAC47509.1|  378|Caenorhabditis elegans multiple exostoses
           homolog 1 protein.
          Length = 378

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
 Frame = +3

Query: 258 RNPASATQPCRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTR 422
           +NP    + C M  CFDFSKC +  K++++P      +   S  Y K+L    ES + T 
Sbjct: 17  QNPTIERKQCTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTN 76

Query: 423 DPNEACLFVPAIDTLDADPLSSEHVSDV 506
           DPNEAC+F+  IDT D D  S  +V +V
Sbjct: 77  DPNEACIFLLGIDTTDRDVRSQNYVKNV 104


>AB241458-1|BAF48989.1|  382|Caenorhabditis elegans heparan sulfate
           polymerase protein.
          Length = 382

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
 Frame = +3

Query: 258 RNPASATQPCRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTR 422
           +NP    + C M  CFDFSKC +  K++++P      +   S  Y K+L    ES + T 
Sbjct: 21  QNPTIERKQCTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTN 80

Query: 423 DPNEACLFVPAIDTLDADPLSSEHVSDV 506
           DPNEAC+F+  IDT D D  S  +V +V
Sbjct: 81  DPNEACIFLLGIDTTDRDVRSQNYVKNV 108


>AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical
           protein Y23H5B.8 protein.
          Length = 174

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/70 (21%), Positives = 31/70 (44%)
 Frame = +3

Query: 111 LLLFMSCAFLLYCYYGNTSFKSDTCKSKLNELPSFATLDDLHLKPSRQKRNPASATQPCR 290
           +LLF+   F ++          + C +KLN++ +   L++L L+ ++  +N         
Sbjct: 4   ILLFLLSTFFVFSIVSGQQTNYENCLTKLNKMKNI--LNNLKLETTKHGKNVKIGNLETF 61

Query: 291 MDTCFDFSKC 320
              C D + C
Sbjct: 62  YHMCIDTTNC 71


>Z81142-3|CAB03505.1|  491|Caenorhabditis elegans Hypothetical
           protein ZK1037.6 protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 385 TFLYEALTVPSLGY-TKIFGSLPHLEKSKHVSIRQGCV 275
           + ++ +  +P+L   ++I+G   H+E S H S  +GC+
Sbjct: 426 SLIFSSSNLPTLNLVSEIYGDAVHIEFSTHDSYSEGCL 463


>Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical
           protein F18E2.2 protein.
          Length = 622

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 241 NHLDKNAILLLQHSLVVWIHVSTFLNVEVIQKFL---CTQVMGL 363
           NHLD NA++ L + L  W    T L V   Q FL   CT ++ L
Sbjct: 256 NHLDLNAVIWLDNYLQTW--KKTLLIVSHDQGFLDSVCTDIIHL 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,174
Number of Sequences: 27780
Number of extensions: 259250
Number of successful extensions: 746
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)