BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV30329 (516 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z73425-6|CAB61014.1| 382|Caenorhabditis elegans Hypothetical pr... 77 1e-14 U94834-1|AAC47509.1| 378|Caenorhabditis elegans multiple exosto... 77 1e-14 AB241458-1|BAF48989.1| 382|Caenorhabditis elegans heparan sulfa... 77 1e-14 AC024753-8|AAF60455.1| 174|Caenorhabditis elegans Hypothetical ... 29 2.0 Z81142-3|CAB03505.1| 491|Caenorhabditis elegans Hypothetical pr... 27 6.0 Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical pr... 27 6.0 >Z73425-6|CAB61014.1| 382|Caenorhabditis elegans Hypothetical protein F12F6.3 protein. Length = 382 Score = 76.6 bits (180), Expect = 1e-14 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 5/88 (5%) Frame = +3 Query: 258 RNPASATQPCRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTR 422 +NP + C M CFDFSKC + K++++P + S Y K+L ES + T Sbjct: 21 QNPTIERKQCTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTN 80 Query: 423 DPNEACLFVPAIDTLDADPLSSEHVSDV 506 DPNEAC+F+ IDT D D S +V +V Sbjct: 81 DPNEACIFLLGIDTTDRDVRSQNYVKNV 108 >U94834-1|AAC47509.1| 378|Caenorhabditis elegans multiple exostoses homolog 1 protein. Length = 378 Score = 76.6 bits (180), Expect = 1e-14 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 5/88 (5%) Frame = +3 Query: 258 RNPASATQPCRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTR 422 +NP + C M CFDFSKC + K++++P + S Y K+L ES + T Sbjct: 17 QNPTIERKQCTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTN 76 Query: 423 DPNEACLFVPAIDTLDADPLSSEHVSDV 506 DPNEAC+F+ IDT D D S +V +V Sbjct: 77 DPNEACIFLLGIDTTDRDVRSQNYVKNV 104 >AB241458-1|BAF48989.1| 382|Caenorhabditis elegans heparan sulfate polymerase protein. Length = 382 Score = 76.6 bits (180), Expect = 1e-14 Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 5/88 (5%) Frame = +3 Query: 258 RNPASATQPCRMDTCFDFSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTR 422 +NP + C M CFDFSKC + K++++P + S Y K+L ES + T Sbjct: 21 QNPTIERKQCTMSNCFDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTN 80 Query: 423 DPNEACLFVPAIDTLDADPLSSEHVSDV 506 DPNEAC+F+ IDT D D S +V +V Sbjct: 81 DPNEACIFLLGIDTTDRDVRSQNYVKNV 108 >AC024753-8|AAF60455.1| 174|Caenorhabditis elegans Hypothetical protein Y23H5B.8 protein. Length = 174 Score = 29.1 bits (62), Expect = 2.0 Identities = 15/70 (21%), Positives = 31/70 (44%) Frame = +3 Query: 111 LLLFMSCAFLLYCYYGNTSFKSDTCKSKLNELPSFATLDDLHLKPSRQKRNPASATQPCR 290 +LLF+ F ++ + C +KLN++ + L++L L+ ++ +N Sbjct: 4 ILLFLLSTFFVFSIVSGQQTNYENCLTKLNKMKNI--LNNLKLETTKHGKNVKIGNLETF 61 Query: 291 MDTCFDFSKC 320 C D + C Sbjct: 62 YHMCIDTTNC 71 >Z81142-3|CAB03505.1| 491|Caenorhabditis elegans Hypothetical protein ZK1037.6 protein. Length = 491 Score = 27.5 bits (58), Expect = 6.0 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = -3 Query: 385 TFLYEALTVPSLGY-TKIFGSLPHLEKSKHVSIRQGCV 275 + ++ + +P+L ++I+G H+E S H S +GC+ Sbjct: 426 SLIFSSSNLPTLNLVSEIYGDAVHIEFSTHDSYSEGCL 463 >Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical protein F18E2.2 protein. Length = 622 Score = 27.5 bits (58), Expect = 6.0 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +1 Query: 241 NHLDKNAILLLQHSLVVWIHVSTFLNVEVIQKFL---CTQVMGL 363 NHLD NA++ L + L W T L V Q FL CT ++ L Sbjct: 256 NHLDLNAVIWLDNYLQTW--KKTLLIVSHDQGFLDSVCTDIIHL 297 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,245,174 Number of Sequences: 27780 Number of extensions: 259250 Number of successful extensions: 746 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 717 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 743 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 996506972 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -