Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30327
(516 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 257 9e-68
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 243 2e-63
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 222 4e-57
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 198 5e-50
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 177 1e-43
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 159 3e-38
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 136 4e-31
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 113 2e-24
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 105 8e-22
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 85 9e-16
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 83 4e-15
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 81 2e-14
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 76 6e-13
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 75 1e-12
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 72 9e-12
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 71 2e-11
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 66 3e-10
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 63 3e-09
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 61 2e-08
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 59 7e-08
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 57 2e-07
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 52 6e-06
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 51 2e-05
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 51 2e-05
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 44 0.002
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 0.72
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 35 0.96
UniRef50_Q0TYH2 Cluster: Putative uncharacterized protein; n=1; ... 35 1.3
UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2; ... 33 2.9
UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11; Bacteri... 33 3.9
UniRef50_Q8GPX1 Cluster: Putative uncharacterized protein ORF SG... 33 5.1
UniRef50_UPI0000E47AE7 Cluster: PREDICTED: similar to Bicaudal D... 32 8.9
UniRef50_P70012 Cluster: Nuclear/mitotic apparatus protein; n=3;... 32 8.9
UniRef50_Q4E757 Cluster: M23/M37 peptidase domain protein; n=3; ... 32 8.9
UniRef50_A5VK01 Cluster: Phosphomevalonate kinase; n=2; Lactobac... 32 8.9
UniRef50_A0Y0D7 Cluster: Methyl-accepting chemotaxis protein; n=... 32 8.9
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 257 bits (630), Expect = 9e-68
Identities = 117/150 (78%), Positives = 134/150 (89%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
VACIGAWHP+RV+F+VARAGQKGYHHRTE+NKKIY+IGQG KDGK+IKNNAST+YDLS
Sbjct: 251 VACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLS 310
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
+KSI P+GGF HYGEV NDFVM+KGC +G KKR++TLRKSL V TKR ALEKI+LKFIDT
Sbjct: 311 DKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDT 370
Query: 155 SSKFGHGRFQTPADKAAFMGTLKKDRIREE 66
+SKFGHGRFQT +K AFMG LKKDRI +E
Sbjct: 371 TSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 243 bits (594), Expect = 2e-63
Identities = 108/149 (72%), Positives = 126/149 (84%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
VACIGAWHP+RV ++ARAGQKGYHHRTE+NKKI+RIG+G H +DGK++KNNAST YD++
Sbjct: 251 VACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVT 310
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
KSITP+GGFPHYGEVNNDFVM+KGC G KKR+ITLRKSL VH R A+E I LKFIDT
Sbjct: 311 AKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDT 370
Query: 155 SSKFGHGRFQTPADKAAFMGTLKKDRIRE 69
+SKFGHGRFQT +K AFMG KK +E
Sbjct: 371 TSKFGHGRFQTAQEKRAFMGPQKKHLEKE 399
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 222 bits (542), Expect = 4e-57
Identities = 103/149 (69%), Positives = 123/149 (82%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
VACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++GK NN STE+DL+
Sbjct: 203 VACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLT 259
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
+K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDT
Sbjct: 260 QKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDT 319
Query: 155 SSKFGHGRFQTPADKAAFMGTLKKDRIRE 69
SSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 320 SSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 198 bits (484), Expect = 5e-50
Identities = 92/150 (61%), Positives = 112/150 (74%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
VACIGAWHPSRV +TVARAGQ GYHHRT +NKKIY++G+ + + N A+T YDL+
Sbjct: 305 VACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSMEP-----NQATTAYDLT 359
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
K+ITPMGGF YG V ND+VM+KG GP++R+ITLR+ + T R EKI LKFIDT
Sbjct: 360 AKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLRRPMAPQTSRKLTEKITLKFIDT 419
Query: 155 SSKFGHGRFQTPADKAAFMGTLKKDRIREE 66
SSK GHGRFQT +K+ + G LKKDRIR E
Sbjct: 420 SSKIGHGRFQTKKEKSQWYGPLKKDRIRRE 449
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 177 bits (431), Expect = 1e-43
Identities = 87/148 (58%), Positives = 108/148 (72%)
Frame = -2
Query: 509 CIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEK 330
C+GAWHP+RV+F+VA+ GQKGYHH + NKKI +IGQG KDGK+IKNNA TEY LS+K
Sbjct: 232 CVGAWHPARVTFSVAQVGQKGYHHNGD-NKKICKIGQGYLIKDGKLIKNNAPTEYHLSDK 290
Query: 329 SITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSS 150
SI +GGF HYGEV NDF+ +KGC + KK +T+ K L V T + AL+KI+ K DT+
Sbjct: 291 SINLLGGFVHYGEVTNDFIRLKGCAVRTKKH-LTICKYLLVQTIQWALKKIDPKLNDTTY 349
Query: 149 KFGHGRFQTPADKAAFMGTLKKDRIREE 66
K GHG FQT K AF+G LKK+ EE
Sbjct: 350 KVGHGCFQTTEGKRAFIGPLKKECTAEE 377
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 159 bits (387), Expect = 3e-38
Identities = 79/131 (60%), Positives = 99/131 (75%)
Frame = -2
Query: 473 TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYG 294
+VA A QKG HH T +NKKIY+IGQG K+GK+IKNNAST+Y KSI+P+GG H G
Sbjct: 214 SVAWARQKGCHHCT-INKKIYKIGQGYLIKNGKIIKNNASTDYT---KSISPLGGCIHCG 269
Query: 293 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPAD 114
+V NDFVM+K C +G KKR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ +
Sbjct: 270 KVTNDFVMLKDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGE 329
Query: 113 KAAFMGTLKKD 81
K FMG LKKD
Sbjct: 330 KKGFMGPLKKD 340
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 136 bits (328), Expect = 4e-31
Identities = 69/139 (49%), Positives = 93/139 (66%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
VACIG W PSRV++T++RAGQKGYH RT NKKIY+IG +++ N+ S D
Sbjct: 233 VACIGPWTPSRVAWTISRAGQKGYHKRTLFNKKIYKIGS---EENFSYYSNSLS---DSI 286
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
KS+ MGGF +G +NND+++IKG G KR I LRK+++ EKI LK++DT
Sbjct: 287 VKSVNCMGGFKKFGFINNDYLIIKGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDT 346
Query: 155 SSKFGHGRFQTPADKAAFM 99
SSK GHGR+++ ADK + M
Sbjct: 347 SSKRGHGRYESSADKFSKM 365
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 113 bits (273), Expect = 2e-24
Identities = 50/67 (74%), Positives = 59/67 (88%)
Frame = -2
Query: 380 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 201
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M+KGC +G KKR++TLRKSL V T
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 200 KRAALEK 180
KR ALEK
Sbjct: 61 KRRALEK 67
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 105 bits (251), Expect = 8e-22
Identities = 54/123 (43%), Positives = 78/123 (63%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
V IG WHP+RV +TV AGQ G+HHRTE+NK++ IG+ +GK +K + +TE +
Sbjct: 253 VGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGK-LKLDENTEIE-- 304
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
ITP GGFPHYG V +DF+MI G G KRII +R ++R K+ +++ + ++
Sbjct: 305 ---ITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSV 361
Query: 155 SSK 147
SK
Sbjct: 362 ESK 364
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 85.0 bits (201), Expect = 9e-16
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = -2
Query: 254 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 75
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 74 REE 66
+E
Sbjct: 148 AKE 150
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 83.0 bits (196), Expect = 4e-15
Identities = 48/125 (38%), Positives = 67/125 (53%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
V IG W P V ++V GQ GYH RTE NK+I +IG NN
Sbjct: 232 VGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIG------------NNGD------ 273
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
ITP GGF HYG + N++V++KG GP KR+I LR+++R + ++ + +I T
Sbjct: 274 --EITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIR--PQEPLIKVPEITYIST 329
Query: 155 SSKFG 141
+SK G
Sbjct: 330 TSKQG 334
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 80.6 bits (190), Expect = 2e-14
Identities = 45/125 (36%), Positives = 68/125 (54%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
V +G W+P R+ + V + GQ GYH RTE NK+I ++G D +
Sbjct: 235 VGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG-------------------DKA 275
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
E+ ITP GGF HYG + ND++M+KG GP KR++ +R ++R K + + ++ T
Sbjct: 276 EE-ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAVR--PKNMPKQAPEITYLST 332
Query: 155 SSKFG 141
SK G
Sbjct: 333 QSKMG 337
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 75.8 bits (178), Expect = 6e-13
Identities = 44/102 (43%), Positives = 58/102 (56%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
+ IG PSRV +TV AGQ GYH RTE NK+I +IG+ DG+
Sbjct: 238 IGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGE-----DGE------------- 279
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 210
+TP GGF +YG V D++MI G GPKKR+I +R ++R
Sbjct: 280 --EVTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAVR 319
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 74.9 bits (176), Expect = 1e-12
Identities = 44/122 (36%), Positives = 64/122 (52%)
Frame = -2
Query: 506 IGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKS 327
+G + V T+ +AGQ GYH RTE+NK+I RI E
Sbjct: 258 MGDFGTGYVRKTIRQAGQMGYHKRTELNKRILRISNP-------------------GESD 298
Query: 326 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 147
+TP GGF HYGEV N +++++G GP KR++ R +R HT + ++L ++ TSSK
Sbjct: 299 VTPAGGFLHYGEVTNPYMVLEGSLPGPAKRLLRFRDPVRPHTN---VFDVDLTYVSTSSK 355
Query: 146 FG 141
G
Sbjct: 356 QG 357
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 71.7 bits (168), Expect = 9e-12
Identities = 41/122 (33%), Positives = 66/122 (54%)
Frame = -2
Query: 506 IGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKS 327
+G W+PSRV TV + GQ GYH RTE+NK++ I G
Sbjct: 237 LGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP-------------------- 276
Query: 326 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 147
TP GGFP+YGEV+ + ++KG GP++R++ R ++R + + L+ ++++ T+S
Sbjct: 277 -TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPN-ESPRLDP-EVRYVSTASN 333
Query: 146 FG 141
G
Sbjct: 334 QG 335
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 70.5 bits (165), Expect = 2e-11
Identities = 46/122 (37%), Positives = 63/122 (51%)
Frame = -2
Query: 506 IGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKS 327
+G + V T+ +AGQ GYH RTE NK+I RI A E E
Sbjct: 238 MGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI---------------AGEE----ESQ 278
Query: 326 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSK 147
ITP GGF HYGEV N +++I+G GP KR+I R + R R +++ ++ T+SK
Sbjct: 279 ITPAGGFLHYGEVKNHYMIIQGSLPGPAKRLIRFRDAAR---PRREQPPVDITYVSTASK 335
Query: 146 FG 141
G
Sbjct: 336 QG 337
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 66.5 bits (155), Expect = 3e-10
Identities = 43/125 (34%), Positives = 60/125 (48%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
+ +G WHP V TV +AGQ GY RT N ++ + +G +A T
Sbjct: 226 IGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKG----------EDADT----- 270
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
I GGF HYG V ND+V++ G GP KR+I +R R K ++ + L +I
Sbjct: 271 ---INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPAR--QKVPDIDNVKLDYISL 325
Query: 155 SSKFG 141
SK G
Sbjct: 326 ESKQG 330
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 63.3 bits (147), Expect = 3e-09
Identities = 36/110 (32%), Positives = 55/110 (50%)
Frame = -2
Query: 506 IGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKS 327
+G P V +TV RAGQ G+H R E NK+I +G G+ + +
Sbjct: 232 LGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVGSA-----GE-------------DDA 273
Query: 326 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKI 177
I P GG+ H+G V D++++KG G +R++ LR +R KR + I
Sbjct: 274 INPSGGYKHFGMVKGDYIVLKGSVPGTYRRLVKLRAQIRNAPKRTSKPNI 323
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 60.9 bits (141), Expect = 2e-08
Identities = 37/102 (36%), Positives = 53/102 (51%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
V +G P V +TV RAGQ G+H R E +K+I +G +T+ D
Sbjct: 231 VGSLGPISPQSVMYTVPRAGQFGFHQRVEYDKRIMIMG---------------NTDDD-- 273
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 210
+ I P GGF H+G V DF+++KG G +R+I LR +R
Sbjct: 274 KLKINPDGGFKHFGLVKGDFIVLKGSVPGAYRRLIKLRSQIR 315
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 58.8 bits (136), Expect = 7e-08
Identities = 40/123 (32%), Positives = 62/123 (50%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
V IG+ P R+ TV GQ GYH RTE NK I +IG+ ++ +
Sbjct: 223 VGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVE---------------- 266
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
GG+ YG+V +++KG GP+KR+I LR+++R K+ +E +++I
Sbjct: 267 -------GGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVE--GIEYISL 317
Query: 155 SSK 147
S K
Sbjct: 318 SPK 320
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 57.2 bits (132), Expect = 2e-07
Identities = 34/102 (33%), Positives = 53/102 (51%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
+ +G P+ + F GQ G+H RTE NK+I ++G D + S
Sbjct: 230 IGSVGPQKPA-IMFYTPFPGQLGFHQRTEYNKRILKVG------DAE------------S 270
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 210
K I P GG+PHYG V + F++++G G KR++ LR ++R
Sbjct: 271 LKEINPPGGWPHYGLVRSQFIIVEGSVPGAVKRLVRLRHAIR 312
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 52.4 bits (120), Expect = 6e-06
Identities = 32/83 (38%), Positives = 42/83 (50%)
Frame = -2
Query: 458 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 279
GQ G+H RTE NK+I +IG K I P GGF YG V N
Sbjct: 268 GQLGFHRRTEYNKRIIKIGD--------------------EPKEINPAGGFVRYGIVRNT 307
Query: 278 FVMIKGCCMGPKKRIITLRKSLR 210
+V+++G +G KKR I LR+ +R
Sbjct: 308 YVLLEGSILGSKKRPIFLREPVR 330
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 50.8 bits (116), Expect = 2e-05
Identities = 29/83 (34%), Positives = 43/83 (51%)
Frame = -2
Query: 458 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 279
GQ G+H RTE NK+I +IG ++ +TP GGF YG V
Sbjct: 310 GQMGFHRRTEYNKRIIKIG--------------------INGWEVTPKGGFLGYGIVYGP 349
Query: 278 FVMIKGCCMGPKKRIITLRKSLR 210
++M+ G +GP+KR++ LR +R
Sbjct: 350 YIMLHGSIIGPRKRLLVLRHPIR 372
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 50.8 bits (116), Expect = 2e-05
Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Frame = -2
Query: 506 IGAWHPSRVSF-TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEK 330
IGA R +F +AGQ G+H RTE NK+I I +K
Sbjct: 239 IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK------------------- 279
Query: 329 SITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT--KRAALEKINLKFIDT 156
+TP GGF YG V + FVM+ G G KR I +R ++R + + K + +I
Sbjct: 280 -VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISL 338
Query: 155 SSKFG 141
+SK G
Sbjct: 339 ASKQG 343
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 44.0 bits (99), Expect = 0.002
Identities = 31/97 (31%), Positives = 44/97 (45%)
Frame = -2
Query: 500 AWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSIT 321
+W S+ V + GQ GYH RT+ NK++ I K I
Sbjct: 260 SWGKGTSSY-VPQPGQMGYHRRTDYNKRVLMISDDPSK--------------------IN 298
Query: 320 PMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLR 210
GG+ HYG V + +V++KG GP KR I +R +R
Sbjct: 299 VEGGWLHYGLVKSKYVVLKGSVFGPPKRPIIMRLPVR 335
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 0.72
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -3
Query: 214 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 92
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 35.1 bits (77), Expect = 0.96
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +3
Query: 225 KSNDTLFRSHAATLDHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLS 404
+ N+ + TL H ++ YF + +SH +II + +++NNFA +F+ L
Sbjct: 450 QKNNIKYNIKWLTLFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL- 508
Query: 405 NTIDFLVHFSTVMITFLTST 464
D V+F+ + I + S+
Sbjct: 509 --CDNYVYFTPINILSIYSS 526
>UniRef50_Q0TYH2 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 685
Score = 34.7 bits (76), Expect = 1.3
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -2
Query: 413 YRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 234
YR G H DG + NNA++++ +K +P F GE + ++ G + K
Sbjct: 567 YRSSWGYHGDDGAIFLNNANSDFSYYKKE-SPSDDFGAKGEFGANDIVGVGLNLETGKGF 625
Query: 233 ITLRKSLR 210
+TL +LR
Sbjct: 626 VTLNGNLR 633
>UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2;
Polaribacter|Rep: Putative uncharacterized protein -
Polaribacter dokdonensis MED152
Length = 587
Score = 33.5 bits (73), Expect = 2.9
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = -2
Query: 455 QKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDF 276
++ H E++K +G+GI+ + + N S YD S GF + N F
Sbjct: 140 EQNIHLVAEISKSRPYVGEGIYVEYRLYVSENVSV-YDTSVTEAPQYNGFWNQEIKINGF 198
Query: 275 VMIKGCCMGPKKRIITLRKSLRVHTKRAAL 186
+ G G R I L+K+L + TK L
Sbjct: 199 PVKMGKYNGENYRYIVLQKALLIPTKTGRL 228
>UniRef50_Q6KI55 Cluster: 50S ribosomal protein L3; n=11;
Bacteria|Rep: 50S ribosomal protein L3 - Mycoplasma
mobile
Length = 297
Score = 33.1 bits (72), Expect = 3.9
Identities = 11/42 (26%), Positives = 26/42 (61%)
Frame = -2
Query: 293 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 168
++ N+ +++KG GPK + ++ +++ R A+E +N+K
Sbjct: 181 DIKNNILLVKGSVPGPKNCFLIIKSAIKNLPSREAIELVNIK 222
>UniRef50_Q8GPX1 Cluster: Putative uncharacterized protein ORF SG31;
n=2; Pseudomonadaceae|Rep: Putative uncharacterized
protein ORF SG31 - Pseudomonas aeruginosa
Length = 161
Score = 32.7 bits (71), Expect = 5.1
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -2
Query: 236 IITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAA 105
I R + + KR+AL+K+ K I+ + GHGR P+D+AA
Sbjct: 52 IAARRSTYKQLNKRSALDKVKRK-IEKAKGTGHGRTAVPSDQAA 94
>UniRef50_UPI0000E47AE7 Cluster: PREDICTED: similar to Bicaudal D
homolog 1 (Drosophila); n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to Bicaudal D homolog
1 (Drosophila) - Strongylocentrotus purpuratus
Length = 762
Score = 31.9 bits (69), Expect = 8.9
Identities = 26/100 (26%), Positives = 48/100 (48%)
Frame = -2
Query: 377 KVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTK 198
K +K + ++S + T G + ++ ++ V +KG M +++++TLR L+ +
Sbjct: 585 KYLKRSVEQSVEMSRQHGTEGSGAENE-DLRDEVVQLKGLLMTKREQVVTLRTVLKANKT 643
Query: 197 RAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDR 78
A + NLK SK+ H +KA T+KK R
Sbjct: 644 TAEVALANLK-----SKYEH-------EKAIIAETMKKLR 671
>UniRef50_P70012 Cluster: Nuclear/mitotic apparatus protein; n=3;
Xenopus|Rep: Nuclear/mitotic apparatus protein - Xenopus
laevis (African clawed frog)
Length = 2253
Score = 31.9 bits (69), Expect = 8.9
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 87 LECTHECSL-VSRRLESTMTELGRGVNEFEVDLF*CSPLCMHTQRLSKSNDTLFRSHAAT 263
LE H+ SL V +L+S EL V + + + C Q L ND+ +SHAAT
Sbjct: 611 LEQDHQTSLSVIEKLKSEKEELASKVQDLDAKMLGLIAKC---QNLDSENDSQSKSHAAT 667
Query: 264 LDHHK 278
++ K
Sbjct: 668 VESLK 672
>UniRef50_Q4E757 Cluster: M23/M37 peptidase domain protein; n=3;
Wolbachia|Rep: M23/M37 peptidase domain protein -
Wolbachia endosymbiont of Drosophila simulans
Length = 312
Score = 31.9 bits (69), Expect = 8.9
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = -2
Query: 479 SFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEK 330
S T+ + YH++++ K+ Y +GI K+G++ N + +Y +S K
Sbjct: 113 SLTINKKAISLYHYKSQDGKERYFNKEGISLKNGEIFANPLNGDYRISSK 162
>UniRef50_A5VK01 Cluster: Phosphomevalonate kinase; n=2;
Lactobacillus reuteri|Rep: Phosphomevalonate kinase -
Lactobacillus reuteri F275
Length = 375
Score = 31.9 bits (69), Expect = 8.9
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 485 RVSFTVARAGQKGYHHRTEMNKK-IYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMG 312
++S AR Q YHH E +K I R+ G H++D + IKN DL ++ T G
Sbjct: 234 KISLFKARR-QTEYHHFLEKSKSCIQRMVDGFHRQDLEAIKNEIRYNRDLLKQLGTNSG 291
>UniRef50_A0Y0D7 Cluster: Methyl-accepting chemotaxis protein; n=1;
Alteromonadales bacterium TW-7|Rep: Methyl-accepting
chemotaxis protein - Alteromonadales bacterium TW-7
Length = 676
Score = 31.9 bits (69), Expect = 8.9
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Frame = -2
Query: 392 HKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSL 213
H++D + + +N + E+ TP+G + + F ++ GP K+L
Sbjct: 215 HQQDTQFLLDNIQPNFVYLEQQATPLGDNLNASQFTEQFNNLRSRLNGPDGIYAQQNKAL 274
Query: 212 R-VHTKRAALEKINLKFIDTSS------KFGHGRFQTPADKA 108
+ + + E+ +FIDT S K RFQT + A
Sbjct: 275 KNTQMAQQSFERFQQEFIDTESQLLQLNKLADERFQTLQNSA 316
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 513,784,365
Number of Sequences: 1657284
Number of extensions: 10455491
Number of successful extensions: 26326
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 25712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26317
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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