Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30327
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 197 7e-52
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 197 7e-52
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.41
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.3
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 2.2
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 3.8
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 5.1
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 6.7
SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc... 25 6.7
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 6.7
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 8.9
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 197 bits (481), Expect = 7e-52
Identities = 94/145 (64%), Positives = 110/145 (75%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
VACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K NAST++D +
Sbjct: 249 VACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDAT 301
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE ++LK+IDT
Sbjct: 302 EKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDT 361
Query: 155 SSKFGHGRFQTPADKAAFMGTLKKD 81
+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 362 ASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 197 bits (481), Expect = 7e-52
Identities = 94/145 (64%), Positives = 110/145 (75%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
VACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K NAST++D +
Sbjct: 249 VACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDAT 301
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
EK ITPMGGF YG V NDFVM+ G GP KR++TLRKSL HT R ALE ++LK+IDT
Sbjct: 302 EKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDT 361
Query: 155 SSKFGHGRFQTPADKAAFMGTLKKD 81
+SKFGHGRFQTPA+ F+GTLKKD
Sbjct: 362 ASKFGHGRFQTPAEAKQFLGTLKKD 386
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.41
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 372 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 470
NFA+L+ SL ++ +F++H +T + T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 339 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 461
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 102 HGYTQEGSYSRRSCGYHNPS 43
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 324 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 452
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 384 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSKRHPRRMPSSNA 509
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 6.7
Identities = 18/75 (24%), Positives = 33/75 (44%)
Frame = +3
Query: 96 THECSLVSRRLESTMTELGRGVNEFEVDLF*CSPLCMHTQRLSKSNDTLFRSHAATLDHH 275
THE +L S++ + E+G ++ E+ F P C +D LF+ H H
Sbjct: 212 THEHTLFSKKGLTKHNEVGDQGSDLEITGFKGHPKCEFCNTHFYDDDELFK-HCRE-KHE 269
Query: 276 KVVVYFTIMGETSHR 320
+ + + G +H+
Sbjct: 270 RCYICDQVAGRPTHQ 284
>SPCC1739.09c |cox13||cytochrome c oxidase subunit
VIa|Schizosaccharomyces pombe|chr 3|||Manual
Length = 130
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 9 FTXRNLRLRSSRWGCGSRSFFAN 77
++ NLR + WG GS++ F N
Sbjct: 97 YSFENLRFKKYPWGDGSKTLFWN 119
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 243 FRSHAATLDHHKVVVYFTIMGETSHRCNGFLRQI-ILSRCIVFNNFAILFVDSL 401
F S +++LD + + +G+ + L++I + S CI++ + A F DSL
Sbjct: 294 FISQSSSLDESLFALVWGCLGDLAPSVAISLQRIKVSSLCILYPSLACCFADSL 347
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 376 KLLKTMHLLSMICLRNPLHRWEVSPI 299
K L H+L CLRN L R + PI
Sbjct: 324 KRLPCGHILHFHCLRNWLERQQTCPI 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,359
Number of Sequences: 5004
Number of extensions: 44271
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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