Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30327
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) 140 8e-34
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) 137 4e-33
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 8e-21
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_20506| Best HMM Match : Lig_chan (HMM E-Value=2.7) 29 3.0
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08) 28 5.3
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_37999| Best HMM Match : RVT_1 (HMM E-Value=7.5e-10) 27 9.2
>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
Length = 347
Score = 140 bits (338), Expect = 8e-34
Identities = 62/82 (75%), Positives = 70/82 (85%)
Frame = -2
Query: 314 GGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 135
GGFPHYG+VN DF+M+KGC +GPKKR++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274
Query: 134 RFQTPADKAAFMGTLKKDRIRE 69
RFQ PA+K AFMG LK DR +E
Sbjct: 275 RFQHPAEKRAFMGMLKSDREKE 296
>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
Length = 338
Score = 137 bits (332), Expect = 4e-33
Identities = 60/67 (89%), Positives = 66/67 (98%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
VACIGAWHP+RVSF+VARAGQ GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL+
Sbjct: 251 VACIGAWHPARVSFSVARAGQAGYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLT 310
Query: 335 EKSITPM 315
+KSI+PM
Sbjct: 311 DKSISPM 317
>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 97.1 bits (231), Expect = 8e-21
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = -2
Query: 449 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 315
GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2 GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46
>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 389 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 264
KK V +N+ T D + + GFPHY + +D + IK
Sbjct: 44 KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85
>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 297 IMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLT 458
++GE FLR++ +S C++ N+ F + D L+ F++ + F T
Sbjct: 274 VLGENFQDLARFLRELQISPCLMVLNYPSFFSADIQKLNDALMFFTSRPLLFET 327
>SB_6540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 245 KKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG 96
K R++ +K ++H+ + K ++F+ SKF H T A A G
Sbjct: 317 KDRLLEWKKERQIHSFSSTTLKARIRFVAAMSKFAHTTEDTTAWDEATKG 366
>SB_20506| Best HMM Match : Lig_chan (HMM E-Value=2.7)
Length = 570
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +3
Query: 342 IILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSKRHPR 488
I SR + F+N A F S +T FLV T + F T SKR+PR
Sbjct: 122 ITSSRIVRFSNMA--FTTSYQDT-SFLVKQFTSLTLFATHVFMSKRYPR 167
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 362 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCC 255
++STE++ + + G F +G+V ND + CC
Sbjct: 3492 HSSTEFNSTLRGGIKSGKFKDFGKVRNDVDCVNRCC 3527
>SB_5912| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-08)
Length = 337
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3
Query: 306 ETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 470
ETS R FLRQ+ ++ C + FA++ + T + LV FS L+ SY
Sbjct: 9 ETSLRYVSFLRQVYIANCALNAIFAVIAI-----TGNLLVLFSIWKCRLLSEPSY 58
>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 406 LDKESTKRMAKLLKTMHLLSMICLRNP-LHRWEVS 305
LDK MA + HLLS+ RNP LH +E++
Sbjct: 247 LDKRFQDEMAFNVSKCHLLSVTNKRNPSLHEYEIN 281
>SB_37999| Best HMM Match : RVT_1 (HMM E-Value=7.5e-10)
Length = 874
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 464 RAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSI 324
R K YH RT + +GQ I +K ++ N E+ LS K I
Sbjct: 652 RKQAKHYHDRTAKSLPSLVVGQPIRRKSRNILNNTTILEH-LSAKLI 697
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,781
Number of Sequences: 59808
Number of extensions: 346000
Number of successful extensions: 814
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -