Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30327
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...   222   1e-58
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...   222   1e-58
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...   222   1e-58
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...   222   1e-58
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...   222   1e-58
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...   222   1e-58
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...   222   1e-58
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...   222   1e-58
U41110-4|AAA82419.1|  575|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  222 bits (542), Expect = 1e-58
 Identities = 103/149 (69%), Positives = 123/149 (82%)
 Frame = -2

Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
           VACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+    ++GK   NN STE+DL+
Sbjct: 251 VACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLT 307

Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
           +K+ITPMGGFP YG VN D++M++G  +GPKKR+ITLRKSL   TKR A EKINLK+IDT
Sbjct: 308 QKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDT 367

Query: 155 SSKFGHGRFQTPADKAAFMGTLKKDRIRE 69
           SSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 368 SSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  222 bits (542), Expect = 1e-58
 Identities = 103/149 (69%), Positives = 123/149 (82%)
 Frame = -2

Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
           VACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+    ++GK   NN STE+DL+
Sbjct: 251 VACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLT 307

Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
           +K+ITPMGGFP YG VN D++M++G  +GPKKR+ITLRKSL   TKR A EKINLK+IDT
Sbjct: 308 QKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDT 367

Query: 155 SSKFGHGRFQTPADKAAFMGTLKKDRIRE 69
           SSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 368 SSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score =  222 bits (542), Expect = 1e-58
 Identities = 103/149 (69%), Positives = 123/149 (82%)
 Frame = -2

Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
           VACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+    ++GK   NN STE+DL+
Sbjct: 153 VACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLT 209

Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
           +K+ITPMGGFP YG VN D++M++G  +GPKKR+ITLRKSL   TKR A EKINLK+IDT
Sbjct: 210 QKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDT 269

Query: 155 SSKFGHGRFQTPADKAAFMGTLKKDRIRE 69
           SSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 270 SSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  222 bits (542), Expect = 1e-58
 Identities = 103/149 (69%), Positives = 123/149 (82%)
 Frame = -2

Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
           VACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+    ++GK   NN STE+DL+
Sbjct: 203 VACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLT 259

Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
           +K+ITPMGGFP YG VN D++M++G  +GPKKR+ITLRKSL   TKR A EKINLK+IDT
Sbjct: 260 QKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDT 319

Query: 155 SSKFGHGRFQTPADKAAFMGTLKKDRIRE 69
           SSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 320 SSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  222 bits (542), Expect = 1e-58
 Identities = 103/149 (69%), Positives = 123/149 (82%)
 Frame = -2

Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
           VACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+    ++GK   NN STE+DL+
Sbjct: 251 VACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLT 307

Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
           +K+ITPMGGFP YG VN D++M++G  +GPKKR+ITLRKSL   TKR A EKINLK+IDT
Sbjct: 308 QKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDT 367

Query: 155 SSKFGHGRFQTPADKAAFMGTLKKDRIRE 69
           SSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 368 SSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score =  222 bits (542), Expect = 1e-58
 Identities = 103/149 (69%), Positives = 123/149 (82%)
 Frame = -2

Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
           VACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+    ++GK   NN STE+DL+
Sbjct: 153 VACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLT 209

Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
           +K+ITPMGGFP YG VN D++M++G  +GPKKR+ITLRKSL   TKR A EKINLK+IDT
Sbjct: 210 QKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDT 269

Query: 155 SSKFGHGRFQTPADKAAFMGTLKKDRIRE 69
           SSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 270 SSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  222 bits (542), Expect = 1e-58
 Identities = 103/149 (69%), Positives = 123/149 (82%)
 Frame = -2

Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
           VACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+    ++GK   NN STE+DL+
Sbjct: 203 VACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLT 259

Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
           +K+ITPMGGFP YG VN D++M++G  +GPKKR+ITLRKSL   TKR A EKINLK+IDT
Sbjct: 260 QKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDT 319

Query: 155 SSKFGHGRFQTPADKAAFMGTLKKDRIRE 69
           SSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 320 SSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  222 bits (542), Expect = 1e-58
 Identities = 103/149 (69%), Positives = 123/149 (82%)
 Frame = -2

Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
           VACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+    ++GK   NN STE+DL+
Sbjct: 251 VACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLT 307

Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
           +K+ITPMGGFP YG VN D++M++G  +GPKKR+ITLRKSL   TKR A EKINLK+IDT
Sbjct: 308 QKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDT 367

Query: 155 SSKFGHGRFQTPADKAAFMGTLKKDRIRE 69
           SSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 368 SSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396


>U41110-4|AAA82419.1|  575|Caenorhabditis elegans Hypothetical
           protein ZK682.5 protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 172 SNSLTPRPSSVMVDSRRRLTRLHSWVHS 89
           +NSLT  PSS +V+ R  LT L+  ++S
Sbjct: 195 TNSLTSIPSSALVNQRNTLTNLNLGLNS 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,893,403
Number of Sequences: 27780
Number of extensions: 256679
Number of successful extensions: 706
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)