Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30327
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 202 1e-52
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 202 1e-52
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 200 3e-52
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 29 1.9
At3g60400.1 68416.m06755 mitochondrial transcription termination... 29 1.9
At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 28 4.3
At4g38360.2 68417.m05424 expressed protein contains Pfam profile... 27 5.7
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ... 27 7.5
At3g48400.1 68416.m05283 DC1 domain-containing protein similar t... 27 9.9
At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger) fa... 27 9.9
At3g23210.1 68416.m02926 basic helix-loop-helix (bHLH) family pr... 27 9.9
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 202 bits (493), Expect = 1e-52
Identities = 94/144 (65%), Positives = 112/144 (77%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
VACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G K G + A TEYD +
Sbjct: 252 VACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVGTEA-HTAMTEYDRT 305
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL T R ALE+I LKFIDT
Sbjct: 306 EKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDT 365
Query: 155 SSKFGHGRFQTPADKAAFMGTLKK 84
+S FGHGRFQT +K F + K
Sbjct: 366 ASIFGHGRFQTSLEKMRFYNRVTK 389
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 202 bits (493), Expect = 1e-52
Identities = 94/144 (65%), Positives = 112/144 (77%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
VACIGAWHP+RVS+TVARAGQ GYHHRTE+NKKIYR+G K G + A TEYD +
Sbjct: 252 VACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLG-----KVGTEA-HTAMTEYDRT 305
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
EK +TPMGGFPHYG V +D++MIKGCC+GPKKR++TLR+SL T R ALE+I LKFIDT
Sbjct: 306 EKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDT 365
Query: 155 SSKFGHGRFQTPADKAAFMGTLKK 84
+S FGHGRFQT +K F + K
Sbjct: 366 ASIFGHGRFQTSLEKMRFYNRVTK 389
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 200 bits (489), Expect = 3e-52
Identities = 94/144 (65%), Positives = 114/144 (79%), Gaps = 1/144 (0%)
Frame = -2
Query: 515 VACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLS 336
VACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+YR+G K G+ ++A TEYD +
Sbjct: 252 VACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVG-----KVGQET-HSAMTEYDRT 305
Query: 335 EKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDT 156
EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR++L T R A+E+I LKFID
Sbjct: 306 EKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDA 365
Query: 155 SSKFGHGRFQTPADKAAFMG-TLK 87
+S GHGRFQT +KA F G T+K
Sbjct: 366 ASNGGHGRFQTSQEKAKFYGRTIK 389
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 29.1 bits (62), Expect = 1.9
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = -2
Query: 326 ITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRK---SLRVHTKRAALEKINLKFIDT 156
I P+ P Y V DF + KGC P+K+ L SLR H ++K
Sbjct: 286 ILPINDDPCYKCVECDFCLHKGCASLPRKKAHFLHNHKISLRAHKDDVYVDKCG-----A 340
Query: 155 SSKFGHGRFQTPADKAAFMGTLKKD 81
+ +G DK++ G +K D
Sbjct: 341 CKTYSNGFKYECHDKSSCRGNIKYD 365
>At3g60400.1 68416.m06755 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 558
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 446 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 294
Y MNK Y G+ K+D +++N A +DL + I+ G H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314
>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 [Lotus
japonicus] GI:3695059; contains Pfam profile PF00620:
RhoGAP domain
Length = 466
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 178 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 83
S+S+S +P PSS+ SR T L S H+RR
Sbjct: 17 SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48
>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 485
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -2
Query: 482 VSFTVARAGQKGYHHRTEMNKKIYRIGQGI--HKKDGKVIKNNASTEYDLSEKSI 324
V FTV +A + T+ N+K+++I Q I H K+ + +K+++ S + I
Sbjct: 373 VRFTVTQAVEPMEKSITKFNEKLHKISQNIKKHDKEKRRVKDDSCMSSSPSRRVI 427
>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 499
Score = 27.1 bits (57), Expect = 7.5
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Frame = -2
Query: 452 KGYHHRTEMNKKIYRIGQGI--HKKDGKVIK---NNASTEYDLSEKSITPMGGFPHYGEV 288
+G ++ YRI GI H G +K N E + + + P+ Y V
Sbjct: 336 EGVPEDKDVELPFYRIADGIILHFSHGCHMKFETNGVYKENEFCQACVLPINEENFYVCV 395
Query: 287 NNDFVMIKGCCMGPKKRI 234
DF++ + C P+K++
Sbjct: 396 KCDFILHEKCADAPRKKV 413
>At3g48400.1 68416.m05283 DC1 domain-containing protein similar to
UV-B light insensitive ULI3 [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 619
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -2
Query: 392 HKKDGKVI-KNNASTEYD---LSEKSITPMGGFPHYGEVNNDFVMIKGCCMGP-KKRIIT 228
H+K ++ KN T++D + + P+ P Y D+V+ + C P KKR +
Sbjct: 375 HEKHNLMLNKNGIITQHDEITRCQACVLPLSSDPSYSCGQCDYVLHETCANLPRKKRHVF 434
Query: 227 LRKSLRVHT 201
K +HT
Sbjct: 435 NNKPFTLHT 443
>At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 257
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 400 KESTKRMAKLLKTMHLLSMICLRNPLHRWEV 308
KE + K T+ L ++C+RNP+ W +
Sbjct: 201 KEYKMKGNKATTTVWLYVLLCMRNPMEAWRL 231
>At3g23210.1 68416.m02926 basic helix-loop-helix (bHLH) family
protein similar to hypothetical protein GB:CAB10220 from
[Arabidopsis thaliana]
Length = 320
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 257 CMGPKKRIITLRK-SLRVHTKRAALEKINLKFIDTSSKFGHGRFQTP-ADKAAFM 99
C G ++R + K + ++ EK+N KF+D SS GR TP DK+A +
Sbjct: 151 CSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSSVLEPGR--TPKTDKSAIL 203
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,285,808
Number of Sequences: 28952
Number of extensions: 238846
Number of successful extensions: 639
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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