Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30326
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 55 5e-09
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 44 1e-05
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 31 0.10
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.24
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 29 0.55
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 27 1.3
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 27 1.7
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 27 1.7
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 2.9
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 26 2.9
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 26 2.9
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 26 3.8
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 5.1
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 25 5.1
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 25 6.7
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 25 6.7
SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr... 25 6.7
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 6.7
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 8.9
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 25 8.9
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 25 8.9
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 55.2 bits (127), Expect = 5e-09
Identities = 42/165 (25%), Positives = 74/165 (44%)
Frame = +2
Query: 2 GYLSRKEYKKLQEQRLALQVVQRNLRKYLQLRTWPWWKLWQKVKPLLNVTRIEDEIXXXX 181
G+L RK ++K + A++++Q NL+ Y + RT+PW KL+ ++PLL+ T+ + ++
Sbjct: 771 GFLQRKIFQKRLKDIQAIKLLQANLQVYNEFRTFPWAKLFFNLRPLLSSTQNDKQLKKRD 830
Query: 182 XXXXXXXXXXXXXXXXRKEVXXXXXXXXXXXXXXXXXXXGNQGSLAETQERANKLQAQKA 361
+ EV SL + +A
Sbjct: 831 AEIIELKYELKKQQNSKSEVERDLVE--------------TNNSLTAVENLLTTERAIAL 876
Query: 362 DLENQLRDTQDRLTQEEDARNQLFQAKKKLEQEVSGLKKDVEDLE 496
D E LR TQ+RL ED+ ++ Q + L++E + LK+ +LE
Sbjct: 877 DKEEILRRTQERLANIEDSFSETKQQNENLQRESASLKQINNELE 921
Score = 25.8 bits (54), Expect = 3.8
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 341 KLQAQKADLENQLRDTQDRLTQEEDARNQLFQAKKKLEQEVSGLKKDVEDLE 496
K + Q+ L NQ + ++ Q+E + ++ + KKLE+E S L DV L+
Sbjct: 1005 KTEIQEMRLTNQKMN--EKSIQQEGSLSESLKRVKKLERENSTLISDVSILK 1054
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +2
Query: 2 GYLSRKEYKKLQEQRLALQVVQRNLRKYLQLRTWPWWKLWQKVKPLLNVTRIED 163
G+L+R+ + ++ A ++Q NLR+ L+ PWW L+ +KPLL T+ ++
Sbjct: 783 GFLTRRRLYRFNHRQDAAILLQHNLRQLKLLKPHPWWNLFLHLKPLLGTTQTDE 836
Score = 27.5 bits (58), Expect = 1.3
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Frame = +2
Query: 308 GSLAETQERANKLQAQKADLENQLRDT-------QDRLTQEEDARNQLFQAKKKLEQEVS 466
G L E +E A Q ADL+N+L D + ++ + N L K+KL +++
Sbjct: 1663 GRLQEVEELARGFQTTNADLQNELADAVVKQKEYEVLYVEKSNDYNTLLLQKEKLMKQID 1722
Query: 467 GLKK-DVEDLE 496
V+DLE
Sbjct: 1723 EFHVIRVQDLE 1733
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 31.1 bits (67), Expect = 0.10
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 329 ERANKLQAQKADLENQLRDTQDRLTQEEDARNQLFQAKKKLEQEVSGLKKDVEDLEL 499
+R +L + A L + DR+TQE + L Q + E+ + L+KD+ D+++
Sbjct: 376 KREKQLSEELAKLRSTNAQLTDRITQESKKASFLEQKASEQEEVIRKLEKDLADVDV 432
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.9 bits (64), Expect = 0.24
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +2
Query: 314 LAETQERANKLQAQKADLENQLRDTQDRLTQEE----DARNQLFQAKKKLEQEVSGLKKD 481
L + Q + Q+ DLE L+D++ ++E + + L + K++ ++E++ L
Sbjct: 1325 LEKLQHEHDDWLIQRGDLEKALKDSEKNFLRKEAEMTENIHSLEEGKEETKKEIAELSSR 1384
Query: 482 VEDLELSVQK 511
+ED +L+ K
Sbjct: 1385 LEDNQLATNK 1394
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 28.7 bits (61), Expect = 0.55
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 314 LAETQERANKLQAQKADLENQLRDTQDRLTQEED--ARNQLFQAK--KKLEQEVSGLKKD 481
L+E +ER +L + + N D + R E+D A+NQ F+ K+ E+++ LK +
Sbjct: 1096 LSEKEERRKELAIKIEQVTNSCSDLELRTNAEQDFYAKNQDFEFDEIKRYEEQLLNLKNE 1155
Query: 482 V 484
+
Sbjct: 1156 L 1156
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/54 (24%), Positives = 33/54 (61%)
Frame = +2
Query: 311 SLAETQERANKLQAQKADLENQLRDTQDRLTQEEDARNQLFQAKKKLEQEVSGL 472
SL ETQ ++++ Q+ +++ + + ++ +EE+ N ++++ +LE +V L
Sbjct: 338 SLPETQRTTSRIETQEEEIKEEEMEGEEE-EEEEEVPN--YESENELEDKVGDL 388
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 365 LENQLRDTQDRLTQEEDARNQLFQAKKKLEQEVSGLKKDVEDL--ELSVQKS 514
L+N+ + + L QE++ N ++LE ++S +++ L +L +QKS
Sbjct: 73 LQNEKLNNEKLLEQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKS 124
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/69 (20%), Positives = 34/69 (49%)
Frame = +2
Query: 305 QGSLAETQERANKLQAQKADLENQLRDTQDRLTQEEDARNQLFQAKKKLEQEVSGLKKDV 484
QG L +Q+ +A E + ++ +EE+ N+ ++ +++ +++ +
Sbjct: 285 QGMLELSQDTRESTAEPRAAGEESASEEEEEEEEEEEEENEADDETRENKRQNRLVREFI 344
Query: 485 EDLELSVQK 511
+LE S+QK
Sbjct: 345 SELESSIQK 353
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 326 QERANKLQAQKADLENQLRDTQ---DRLTQEEDARNQLFQAKKKLEQEVSGLKKDV 484
Q + L ++ DL N + +Q D+L + + + +K K+ ++ G KKDV
Sbjct: 541 QVELDMLLNKENDLINDVESSQSSLDKLRNDAEENRNILSSKLKVLSDLKGEKKDV 596
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 29 KLQEQRLALQVVQRNLRKYLQL 94
++QEQR AL V N KYL+L
Sbjct: 1052 QIQEQRTALSEVGNNENKYLKL 1073
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 437 AKKKLEQEVSGLKKDVEDLELS 502
+K K+++E+S LK ++ DLE S
Sbjct: 291 SKSKVQEEISRLKSELRDLEKS 312
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 308 GSLAETQERANKLQAQKADLENQLRDTQDRLTQEE---DARNQLFQAKKKLEQEVSGLKK 478
GS+ + L + + + N+++DT+ +T E+ DA +AK+K E E +
Sbjct: 290 GSITRAGAKDAALHSFRTETVNEVQDTKTDITSEKSALDAYYATLRAKQKEESEFMD-SE 348
Query: 479 DVEDLE 496
+V+D E
Sbjct: 349 NVDDEE 354
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 336 LTSSRPRRLISRTNSGTPKTAS 401
L S+ PR +I ++ SGT KTA+
Sbjct: 148 LLSNPPRNMIGQSQSGTGKTAA 169
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 299 GNQGSLAETQERANKLQAQKADLENQLRDTQDRLTQEEDARNQLFQAKKKLEQEVS 466
G Q L T+ + + A L++Q+RD + + + D+ L Q L+ E+S
Sbjct: 498 GLQKDLKNTKGNLDDEIGRSAFLKSQIRDQELTIEKLHDSLETLSQTNNSLQCEIS 553
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Frame = +2
Query: 338 NKLQAQKADLENQ------LRDTQDRLTQEEDA----RNQLFQAKKKLEQEVSGLKK 478
+K+ Q+ DL N+ LR+ L +E A L++ +KLE+E++ LKK
Sbjct: 84 SKIGEQERDLNNEKLASETLREKTQLLEKENGALKVENGYLYEKSRKLEEEMAHLKK 140
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +2
Query: 317 AETQERANKLQAQKADLENQLR-DTQDRLTQEEDARNQLF--QAKKKLEQEVSGLKKDVE 487
A+ E K + D+++ + D D ++E R QL ++K+K ++ G+ K+
Sbjct: 302 AKAHEALEKWEEAVRDVQSAIELDASDANLRQELRRLQLELKKSKRKDHYKILGVSKEAT 361
Query: 488 DLEL 499
D+E+
Sbjct: 362 DIEI 365
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Frame = -2
Query: 101 RCGVAGTCASCA---GQLGEPISAPAASC 24
RC V G C + G++ EPI P C
Sbjct: 325 RCSVCGHCVTVEIDRGRIAEPIKCPREVC 353
>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 112
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 326 QERANKLQAQKADLENQLRDTQDRLTQEEDARNQLFQAKKKLE 454
Q A+++Q + D + QLR ++ +E A AKK+LE
Sbjct: 2 QNLASQIQEKAVDSQQQLRTIMVQIAAKERALKISELAKKELE 44
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 371 NQLRDTQDRLTQEEDARNQLFQAKKKLE 454
NQ D RL Q+ED RN+ ++ +++ E
Sbjct: 389 NQEDDIFKRLKQQEDRRNENYRRRQQRE 416
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 335 ANKLQAQKADLENQLRDTQDRL-TQEEDARNQLFQAKKKLEQEVSGLKKDVEDL 493
AN++ A+ +++++L+D D+L + EDA + L+ + S + + +L
Sbjct: 772 ANQVNARLTEVQDRLKDITDKLASAREDAMSLYGSVVDSLQTQSSDRQTAITEL 825
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 24.6 bits (51), Expect = 8.9
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +2
Query: 305 QGSLAETQERANKLQAQKADLENQLRDTQDRLTQEEDARNQLFQAKKKLEQEVSGLKKDV 484
+ S + E ANKL ++ + L + +R T DR + + + + EQE +D
Sbjct: 94 ESSYEDETETANKL-SRVSSLVSVIRQTIDR--------KKSLERRVREEQEEKTDNEDD 144
Query: 485 EDLELSVQKS 514
D+E+S Q+S
Sbjct: 145 NDVEISTQES 154
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 305 QGSLAETQERANKLQAQKADLENQLRDTQDRLTQEEDARNQL 430
Q ++ + E+ + DL+N+L TQ RL++ D +++
Sbjct: 242 QKAMDDVTEKFASKSKEYEDLQNELDATQKRLSRVSDLEHEV 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,394,361
Number of Sequences: 5004
Number of extensions: 18142
Number of successful extensions: 127
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -