Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30324
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i pr... 89 2e-18
AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4 ... 89 2e-18
Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical pr... 82 3e-16
U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated p... 82 3e-16
AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3 ... 82 3e-16
AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2 ... 82 3e-16
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 73 9e-14
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 73 9e-14
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 40 0.001
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 38 0.004
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 38 0.004
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 36 0.023
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 36 0.023
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 34 0.052
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 33 0.092
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 33 0.092
AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 31 0.49
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 31 0.65
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 29 2.6
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 2.6
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 29 2.6
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 2.6
AF022982-1|AAB69937.1| 224|Caenorhabditis elegans Hypothetical ... 29 2.6
Z68159-5|CAA92288.2| 472|Caenorhabditis elegans Hypothetical pr... 28 3.4
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 28 3.4
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 28 3.4
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 28 3.4
Z70287-1|CAA94302.3| 294|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z68315-5|CAE48501.1| 689|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical pr... 27 6.0
AL031620-5|CAA20926.1| 277|Caenorhabditis elegans Hypothetical ... 27 6.0
AF078788-2|AAC26964.1| 311|Caenorhabditis elegans Hypothetical ... 27 8.0
>AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i
protein 4 protein.
Length = 194
Score = 89.0 bits (211), Expect = 2e-18
Identities = 52/134 (38%), Positives = 68/134 (50%)
Frame = +3
Query: 114 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 293
+RK+ EVRKR+EEAS GF+TP
Sbjct: 16 ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75
Query: 294 XXXCGKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 473
++D NED ++ V + ER+ LE E +D+ YIV++KD EI++L VNDL
Sbjct: 76 QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEINELTIAVNDL 133
Query: 474 RGKFVKPTLKKVSK 515
RGKFVKPTLKKVSK
Sbjct: 134 RGKFVKPTLKKVSK 147
>AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4
protein.
Length = 194
Score = 89.0 bits (211), Expect = 2e-18
Identities = 52/134 (38%), Positives = 68/134 (50%)
Frame = +3
Query: 114 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 293
+RK+ EVRKR+EEAS GF+TP
Sbjct: 16 ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75
Query: 294 XXXCGKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL 473
++D NED ++ V + ER+ LE E +D+ YIV++KD EI++L VNDL
Sbjct: 76 QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEINELTIAVNDL 133
Query: 474 RGKFVKPTLKKVSK 515
RGKFVKPTLKKVSK
Sbjct: 134 RGKFVKPTLKKVSK 147
>Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical
protein T20B3.2 protein.
Length = 260
Score = 81.8 bits (193), Expect = 3e-16
Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Frame = +3
Query: 120 KRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 299
K+AEVRKRMEEA+ GF+TP
Sbjct: 31 KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90
Query: 300 XCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLR 476
++D N+ + ++ +D R+ LE+EKFD+ + V + + EI+ L QVNDLR
Sbjct: 91 RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEINQLTIQVNDLR 150
Query: 477 GKFVKPTLKKVSK 515
GKFVKPTLKKVSK
Sbjct: 151 GKFVKPTLKKVSK 163
>U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated
protein 27 protein.
Length = 242
Score = 81.8 bits (193), Expect = 3e-16
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Frame = +3
Query: 114 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 293
+ K+AEVRKR+EEA GF+TP
Sbjct: 17 EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76
Query: 294 XXXCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVND 470
N+D ++ ++++ D R+ +LE+EK+D+ Y+V + + EI+ L +VND
Sbjct: 77 ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTIEVND 136
Query: 471 LRGKFVKPTLKKVSK 515
LRGKFVKP+LKKVSK
Sbjct: 137 LRGKFVKPSLKKVSK 151
>AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3
protein.
Length = 260
Score = 81.8 bits (193), Expect = 3e-16
Identities = 48/133 (36%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Frame = +3
Query: 120 KRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 299
K+AEVRKRMEEA+ GF+TP
Sbjct: 31 KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90
Query: 300 XCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLR 476
++D N+ + ++ +D R+ LE+EKFD+ + V + + EI+ L QVNDLR
Sbjct: 91 RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEINQLTIQVNDLR 150
Query: 477 GKFVKPTLKKVSK 515
GKFVKPTLKKVSK
Sbjct: 151 GKFVKPTLKKVSK 163
>AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2
protein.
Length = 242
Score = 81.8 bits (193), Expect = 3e-16
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Frame = +3
Query: 114 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 293
+ K+AEVRKR+EEA GF+TP
Sbjct: 17 EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76
Query: 294 XXXCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVND 470
N+D ++ ++++ D R+ +LE+EK+D+ Y+V + + EI+ L +VND
Sbjct: 77 ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTIEVND 136
Query: 471 LRGKFVKPTLKKVSK 515
LRGKFVKP+LKKVSK
Sbjct: 137 LRGKFVKPSLKKVSK 151
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 73.3 bits (172), Expect = 9e-14
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Frame = +3
Query: 114 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 293
+ K+AEVRKR+EEA GF+TP
Sbjct: 30 EAKKAEVRKRLEEAGQKKQKK-GFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88
Query: 294 XXXCGKPKNIDDANEDT-IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVND 470
N+D ++ ++ + D R+ LE+EK+D+ +I + I+ LN +VND
Sbjct: 89 AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVND 148
Query: 471 LRGKFVKPTLKKVSK 515
LRGKFVKP+LKKVSK
Sbjct: 149 LRGKFVKPSLKKVSK 163
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 73.3 bits (172), Expect = 9e-14
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Frame = +3
Query: 114 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 293
+ K+AEVRKR+EEA GF+TP
Sbjct: 30 EAKKAEVRKRLEEAGQKKQKK-GFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88
Query: 294 XXXCGKPKNIDDANEDT-IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVND 470
N+D ++ ++ + D R+ LE+EK+D+ +I + I+ LN +VND
Sbjct: 89 AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVND 148
Query: 471 LRGKFVKPTLKKVSK 515
LRGKFVKP+LKKVSK
Sbjct: 149 LRGKFVKPSLKKVSK 163
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +3
Query: 318 NIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQ 461
N + + +K K+ H+RI +LE EK+DLE +R++ ++ +LN +
Sbjct: 1043 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDMKELNER 1090
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 309 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL-RGKF 485
K +++ + +K K H RI +LE EK+DLE +R++ ++ +LN + + R K
Sbjct: 125 KAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLKELNERQRQVARNKA 184
Query: 486 VKPTL 500
+K L
Sbjct: 185 LKKGL 189
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 309 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDL-RGKF 485
K +++ + +K K H RI +LE EK+DLE +R++ ++ +LN + + R K
Sbjct: 229 KAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLKELNERQRQVARNKA 288
Query: 486 VKPTL 500
+K L
Sbjct: 289 LKKGL 293
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 35.5 bits (78), Expect = 0.023
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +3
Query: 345 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQ 461
+K K+ H+RI +LE +K+DLE +R++ ++ +LN +
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEYDLKELNER 254
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 35.5 bits (78), Expect = 0.023
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +3
Query: 345 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQ 461
+K K+ H+RI +LE +K+DLE +R++ ++ +LN +
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEYDLKELNER 254
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 318 NIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 452
N + + +K K+ H+RI +LE EK+DLE +R++ + L
Sbjct: 209 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDPKQL 253
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 33.5 bits (73), Expect = 0.092
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 345 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNS-QVNDLRGKFVKPTL 500
+K + H RI +LE EK+DLE +R+D ++ +L+ Q R K +K L
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARNKALKKGL 284
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 33.5 bits (73), Expect = 0.092
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 345 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNS-QVNDLRGKFVKPTL 500
+K + H RI +LE EK+DLE +R+D ++ +L+ Q R K +K L
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARNKALKKGL 284
>AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 31.1 bits (67), Expect = 0.49
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = +3
Query: 336 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPTLKKVS 512
ED + R+C+ Y + + R+ + + +LEY K K+ + + + + + K + L K++
Sbjct: 671 EDVVNRLCESYKKLLVRVAELETELEY-EKEKNRALQETINNSSSVDSKINQEKLNKIN 728
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 30.7 bits (66), Expect = 0.65
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 372 ERIARLEDEKFDLEYIVKRKDMEISDLNSQVND 470
E I L K + E ++K+KD+E+S + S++ D
Sbjct: 1074 ELIEELNRHKHEQEQVIKKKDIELSSIQSRLED 1106
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 324 DDA--NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 497
DDA D + + E+ +L+ E ++ + K+ E +DL + ++DLRG F K T
Sbjct: 686 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 745
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 324 DDA--NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 497
DDA D + + E+ +L+ E ++ + K+ E +DL + ++DLRG F K T
Sbjct: 686 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 745
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 324 DDA--NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 497
DDA D + + E+ +L+ E ++ + K+ E +DL + ++DLRG F K T
Sbjct: 446 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 505
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 324 DDA--NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVKPT 497
DDA D + + E+ +L+ E ++ + K+ E +DL + ++DLRG F K T
Sbjct: 686 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 745
>AF022982-1|AAB69937.1| 224|Caenorhabditis elegans Hypothetical
protein T23B12.5 protein.
Length = 224
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = -3
Query: 490 LTNLPLRSLTWEFRSEISISFLLTMYSRSNFXXXXXXXXXXXSLQTLLIVSSLASSMFLG 311
L NLPL + W F S S+ L + R + L+ L++SS+ ++FL
Sbjct: 39 LLNLPLERIFWNFLSLSSVPLQLFVVLR-QYMLTFSTSNKLQLLRITLVISSVFQTLFLT 97
Query: 310 L 308
L
Sbjct: 98 L 98
>Z68159-5|CAA92288.2| 472|Caenorhabditis elegans Hypothetical
protein C33D9.5 protein.
Length = 472
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 342 TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVN 467
T KR+ + YH I L++ + Y +KRK + + + ++N
Sbjct: 200 TTKRLMEHYHIEIDNLKEAHSEEMYKIKRKYSTLEEYSEEIN 241
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 324 DDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 452
D+ E I+ V + + RLE+EK DLE ++ + E+S +
Sbjct: 1072 DELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQI 1114
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 324 DDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 452
D+ E I+ V + + RLE+EK DLE ++ + E+S +
Sbjct: 1145 DELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQI 1187
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 324 DDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 452
D+ E I+ V + + RLE+EK DLE ++ + E+S +
Sbjct: 1145 DELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQI 1187
>Z70287-1|CAA94302.3| 294|Caenorhabditis elegans Hypothetical
protein R09E10.1 protein.
Length = 294
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +3
Query: 315 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVK 491
+N+ +KRV K + + + D K DL IVK++ E + + KF+K
Sbjct: 200 RNLQTQGPQHLKRVKKFLYGQYPKYVDMKRDLLKIVKQQKPEAQSVRDESAQAISKFIK 258
>Z68315-5|CAE48501.1| 689|Caenorhabditis elegans Hypothetical
protein F28C6.4b protein.
Length = 689
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 390 EDEKFDLEY-----IVKRKDMEISDLNSQVNDLRGKFVKPTLKK 506
E+E F+ ++ IV+ K + ISD+ + D KF+K LKK
Sbjct: 336 EEEYFEKQHNQFRRIVQAKHLAISDICDENCDYSDKFIKSALKK 379
>Z68315-4|CAA92675.2| 745|Caenorhabditis elegans Hypothetical
protein F28C6.4a protein.
Length = 745
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 390 EDEKFDLEY-----IVKRKDMEISDLNSQVNDLRGKFVKPTLKK 506
E+E F+ ++ IV+ K + ISD+ + D KF+K LKK
Sbjct: 336 EEEYFEKQHNQFRRIVQAKHLAISDICDENCDYSDKFIKSALKK 379
>AL031620-5|CAA20926.1| 277|Caenorhabditis elegans Hypothetical
protein C18B12.5 protein.
Length = 277
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 315 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSQVND-LRGKFVK 491
KN N D K + D+H+ +++ + + LEYI +I + S+ N + GKF
Sbjct: 171 KNASILNLDC-KYLPADFHQHLSKFKHLEIKLEYISNEDIDKIKKMISEPNSIMNGKFKS 229
Query: 492 PT 497
T
Sbjct: 230 ST 231
>AF078788-2|AAC26964.1| 311|Caenorhabditis elegans Hypothetical
protein ZC190.5 protein.
Length = 311
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = -3
Query: 475 LRSLTWEFRSEISI---SFLLTMYSRSNFXXXXXXXXXXXSLQTLLIVSSLASSMFLGL 308
LRS TWEF E + S + ++S + + +LI S+ S++FL L
Sbjct: 74 LRSKTWEFIHEFGVCLQSLSMLLFSMERYSAIRYPDFHASTTFVVLIYVSIVSAVFLAL 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,986,245
Number of Sequences: 27780
Number of extensions: 115128
Number of successful extensions: 570
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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