Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30321
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6TXE9 Cluster: Ribonuclease P protein component; n=2; ...    33   3.9  
UniRef50_A0CLK1 Cluster: Chromosome undetermined scaffold_20, wh...    33   3.9  
UniRef50_Q6C2E6 Cluster: Similarity; n=1; Yarrowia lipolytica|Re...    32   6.8  

>UniRef50_A6TXE9 Cluster: Ribonuclease P protein component; n=2;
           Clostridiales|Rep: Ribonuclease P protein component -
           Alkaliphilus metalliredigens QYMF
          Length = 111

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 27/69 (39%), Positives = 34/69 (49%)
 Frame = -1

Query: 339 VIKKVFN*FHTSEVNYKTKASFR*NEGRIRLHVDIVIDLICSPACYELM*YLL*VTIMYS 160
           V KKV N    S V    K S+R NEG+I+   DIV   I  P C E   Y    + +  
Sbjct: 46  VSKKVGNSVVRSRVKRLMKESYRLNEGKIKTSHDIV--FIARPNCKEST-YKEIESALLH 102

Query: 159 LLRDMPLLS 133
           L+R M L+S
Sbjct: 103 LIRKMKLIS 111


>UniRef50_A0CLK1 Cluster: Chromosome undetermined scaffold_20, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_20,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 190

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = -1

Query: 171 IMYSLLRDMPLLSLYRILIDINLISIYLYPKADFFVSIYPEINIYFAYLFTRLLNS 4
           I  +LL D+ +L  +RI++D   I+ + + K     S+ P   ++  Y+  +++NS
Sbjct: 122 IFSNLLNDLKILIPFRIILDYLRINNFFFQKPQSGSSLVPNKALFVCYVTAKMMNS 177


>UniRef50_Q6C2E6 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 185

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -1

Query: 144 PLLSLYRILIDINLISIYLYPKADFFVSIYPEINIYFAYLF 22
           P +S+Y  L     I I+LYP    ++ +YP I+IY  +LF
Sbjct: 73  PFISIYIHLYPFISIYIHLYPFISIYIHLYPFISIYI-HLF 112



 Score = 31.9 bits (69), Expect = 8.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 144 PLLSLYRILIDINLISIYLYPKADFFVSIYPEINIY 37
           P +S+Y  L     I I+LYP    ++ +YP I+IY
Sbjct: 33  PFISIYIHLYPFISIYIHLYPFISIYIHLYPFISIY 68



 Score = 31.9 bits (69), Expect = 8.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 144 PLLSLYRILIDINLISIYLYPKADFFVSIYPEINIY 37
           P +S+Y  L     I I+LYP    ++ +YP I+IY
Sbjct: 43  PFISIYIHLYPFISIYIHLYPFISIYIHLYPFISIY 78



 Score = 31.9 bits (69), Expect = 8.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 144 PLLSLYRILIDINLISIYLYPKADFFVSIYPEINIY 37
           P +S+Y  L     I I+LYP    ++ +YP I+IY
Sbjct: 53  PFISIYIHLYPFISIYIHLYPFISIYIHLYPFISIY 88



 Score = 31.9 bits (69), Expect = 8.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 144 PLLSLYRILIDINLISIYLYPKADFFVSIYPEINIY 37
           P +S+Y  L     I I+LYP    ++ +YP I+IY
Sbjct: 63  PFISIYIHLYPFISIYIHLYPFISIYIHLYPFISIY 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,269,924
Number of Sequences: 1657284
Number of extensions: 7213358
Number of successful extensions: 12070
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12066
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)