Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30321
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    27   2.2  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   2.9  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   6.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   8.9  

>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 262 FILPKTCLSLVIYLGGMKLIKNFFNYLDARFERLTAMSKIL 384
           F L   C+++   + GMKL K+++   D   E + +++ IL
Sbjct: 194 FSLACGCIAMAARVIGMKLPKDWYRVFDTTKEEIDSLTSIL 234


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 286  SLVIYLGGMKLIKNFFNYLDARFERL--TAMSKILPSLNSLRTVDSSS 423
            S+ I+ GG K  K   NY+   +E+L     SK++P   ++ T DS+S
Sbjct: 1735 SITIHFGGSKGKKIRDNYMAMAYEKLMEDGTSKVVPVFETI-TKDSTS 1781


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 162 SLLRDMPLLSLYRILIDINLISIYLYPKADFFVSI--YPEINIYFAY 28
           + L   P LS+Y + + + +   Y YP   +F SI  Y  I+ Y A+
Sbjct: 387 TFLHIYPQLSIYNLELQLGIEKEYQYP---YFESIMWYTAIHFYLAF 430


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = -1

Query: 174 TIMYSLLRDMPLLSLYRILI--------DINLISIYLYPKADFFVSIYPEINIYFAYLFT 19
           T++Y L ++   + +Y +L+        D  L +IY YP  D  +S+  + +I F    T
Sbjct: 156 TVLYWLCKEYNFVPIYGVLLPLKLHPSFDTQLWNIYGYPVVDLQLSVLSKGHIEFYLKPT 215

Query: 18  R 16
           R
Sbjct: 216 R 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,182
Number of Sequences: 5004
Number of extensions: 34195
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)