Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30321
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             29   2.3  
SB_56928| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_52488| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 171 IMYSLLRDMPLLSLYRILIDINLISIYLYPKADFFVSIYP--EINIYFAYLFTRLLN 7
           I Y  +   PL++ +  L  I+  +I+  P   + + +YP     I+F+ LFT L+N
Sbjct: 320 ISYRTIHFSPLVTYHIHLYPISYRTIHFSPLFTYLIHLYPISYRTIHFSPLFTYLIN 376



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -1

Query: 171 IMYSLLRDMPLLSLYRILIDINLISIYLYPKADFFVSIYP--EINIYFAYLFTRLL 10
           I Y  +   PLL+    L  I+  +I+  P   + + +YP    NI+F+ LFT L+
Sbjct: 80  ISYRTIHFSPLLTYPVHLYPISYRTIHFSPLFTYLIRLYPISYRNIHFSPLFTYLI 135



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 171 IMYSLLRDMPLLSLYRILIDINLISIYLYPKADFFVSIYP--EINIYFAYLFTRLLN 7
           I Y  +   PLL+    L  I+  +I+  P   + + +YP     I+F+ LFT L++
Sbjct: 300 ISYRTIHFSPLLTYLINLYPISYRTIHFSPLVTYHIHLYPISYRTIHFSPLFTYLIH 356


>SB_56928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 132 LYRILIDINLISIYLYPKADFFVSIYPEINIYF-AYLFTRL 13
           LY++L  +  IS YLYPK    V +Y  + +   AYL+ ++
Sbjct: 39  LYQVLKVV--ISAYLYPKVHEVVVVYQVLRVVISAYLYPKV 77


>SB_52488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = -1

Query: 165 YSLLRDMPLLSLYRILIDINLISIYL----YPKADFF--VSIYPEINIYFA 31
           Y +L   P+L +Y IL    +  IYL    YP  D +  +  YP ++I+ A
Sbjct: 81  YPILDTYPILDIYPILDTYPIYDIYLILDTYPILDIYSILDTYPILDIFCA 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,210,601
Number of Sequences: 59808
Number of extensions: 220525
Number of successful extensions: 444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)